Running qsub with anaconda environment












4















I have a program that usually runs inside a conda environmet in Linux, because I use it to manage my libraries, with this instructions:



source activate my_environment
python hello_world.py


How can I run hello_world.py in a high computer that works with PBS. Instructions explains to run adapting the code script.sh, shown below, and calling with the instruction qsub.



# script.sh
#!/bin/sh
#PBS -S /bin/sh
#PBS -N job_example
#PBS -l select=24
#PBS -j oe
cd $PBS_O_WORKDIR
mpiexec ./programa_mpi


How do I run hello_world.py with qsub using my anaconda environment?










share|improve this question





























    4















    I have a program that usually runs inside a conda environmet in Linux, because I use it to manage my libraries, with this instructions:



    source activate my_environment
    python hello_world.py


    How can I run hello_world.py in a high computer that works with PBS. Instructions explains to run adapting the code script.sh, shown below, and calling with the instruction qsub.



    # script.sh
    #!/bin/sh
    #PBS -S /bin/sh
    #PBS -N job_example
    #PBS -l select=24
    #PBS -j oe
    cd $PBS_O_WORKDIR
    mpiexec ./programa_mpi


    How do I run hello_world.py with qsub using my anaconda environment?










    share|improve this question



























      4












      4








      4








      I have a program that usually runs inside a conda environmet in Linux, because I use it to manage my libraries, with this instructions:



      source activate my_environment
      python hello_world.py


      How can I run hello_world.py in a high computer that works with PBS. Instructions explains to run adapting the code script.sh, shown below, and calling with the instruction qsub.



      # script.sh
      #!/bin/sh
      #PBS -S /bin/sh
      #PBS -N job_example
      #PBS -l select=24
      #PBS -j oe
      cd $PBS_O_WORKDIR
      mpiexec ./programa_mpi


      How do I run hello_world.py with qsub using my anaconda environment?










      share|improve this question
















      I have a program that usually runs inside a conda environmet in Linux, because I use it to manage my libraries, with this instructions:



      source activate my_environment
      python hello_world.py


      How can I run hello_world.py in a high computer that works with PBS. Instructions explains to run adapting the code script.sh, shown below, and calling with the instruction qsub.



      # script.sh
      #!/bin/sh
      #PBS -S /bin/sh
      #PBS -N job_example
      #PBS -l select=24
      #PBS -j oe
      cd $PBS_O_WORKDIR
      mpiexec ./programa_mpi


      How do I run hello_world.py with qsub using my anaconda environment?







      python linux anaconda pbs qsub






      share|improve this question















      share|improve this question













      share|improve this question




      share|improve this question








      edited Nov 17 '18 at 17:26







      Alfredo_MF

















      asked Nov 16 '18 at 22:18









      Alfredo_MFAlfredo_MF

      1428




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