How to perform up-sampling using sample() function(py-spark)
I am working on a Binary Classification Machine Learning Problem and I am trying to balance the training set as I have an imbalanced target class variable. I am using Py-Spark for building the model.
Below is the code which is working to balance the data
train_initial, test = new_data.randomSplit([0.7, 0.3], seed = 2018)
train_initial.groupby('label').count().toPandas()
label count
0 0.0 712980
1 1.0 2926
train_new = train_initial.sampleBy('label', fractions={0: 2926./712980, 1: 1.0}).cache()
The above code performs under-sampling, but I think this might lead to loss of information. However, I am not sure how to perform upsampling. I also tried to use sample function as below:
train_up = train_initial.sample(True, 10.0, seed = 2018)
Although, it increases the count of 1 in my data set, it also increases the count of 0 and gives the below result.
label count
0 0.0 7128722
1 1.0 29024
Can someone please help me to achieve up-sampling in py-spark.
Thanks a lot in Advance!!
machine-learning pyspark random-forest sampling
asked Nov 13 '18 at 2:57
Tushar MehtaTushar Mehta
407
add a comment |
I am working on a Binary Classification Machine Learning Problem and I am trying to balance the training set as I have an imbalanced target class variable. I am using Py-Spark for building the model.
Below is the code which is working to balance the data
train_initial, test = new_data.randomSplit([0.7, 0.3], seed = 2018)
train_initial.groupby('label').count().toPandas()
label count
0 0.0 712980
1 1.0 2926
train_new = train_initial.sampleBy('label', fractions={0: 2926./712980, 1: 1.0}).cache()
The above code performs under-sampling, but I think this might lead to loss of information. However, I am not sure how to perform upsampling. I also tried to use sample function as below:
train_up = train_initial.sample(True, 10.0, seed = 2018)
Although, it increases the count of 1 in my data set, it also increases the count of 0 and gives the below result.
label count
0 0.0 7128722
1 1.0 29024
Can someone please help me to achieve up-sampling in py-spark.
Thanks a lot in Advance!!
machine-learning pyspark random-forest sampling
asked Nov 13 '18 at 2:57
Tushar MehtaTushar Mehta
407
add a comment |
I am working on a Binary Classification Machine Learning Problem and I am trying to balance the training set as I have an imbalanced target class variable. I am using Py-Spark for building the model.
Below is the code which is working to balance the data
train_initial, test = new_data.randomSplit([0.7, 0.3], seed = 2018)
train_initial.groupby('label').count().toPandas()
label count
0 0.0 712980
1 1.0 2926
train_new = train_initial.sampleBy('label', fractions={0: 2926./712980, 1: 1.0}).cache()
The above code performs under-sampling, but I think this might lead to loss of information. However, I am not sure how to perform upsampling. I also tried to use sample function as below:
train_up = train_initial.sample(True, 10.0, seed = 2018)
Although, it increases the count of 1 in my data set, it also increases the count of 0 and gives the below result.
label count
0 0.0 7128722
1 1.0 29024
Can someone please help me to achieve up-sampling in py-spark.
Thanks a lot in Advance!!
machine-learning pyspark random-forest sampling
asked Nov 13 '18 at 2:57
Tushar MehtaTushar Mehta
407
I am working on a Binary Classification Machine Learning Problem and I am trying to balance the training set as I have an imbalanced target class variable. I am using Py-Spark for building the model.
Below is the code which is working to balance the data
train_initial, test = new_data.randomSplit([0.7, 0.3], seed = 2018)
train_initial.groupby('label').count().toPandas()
label count
0 0.0 712980
1 1.0 2926
train_new = train_initial.sampleBy('label', fractions={0: 2926./712980, 1: 1.0}).cache()
The above code performs under-sampling, but I think this might lead to loss of information. However, I am not sure how to perform upsampling. I also tried to use sample function as below:
train_up = train_initial.sample(True, 10.0, seed = 2018)
Although, it increases the count of 1 in my data set, it also increases the count of 0 and gives the below result.
label count
0 0.0 7128722
1 1.0 29024
Can someone please help me to achieve up-sampling in py-spark.
Thanks a lot in Advance!!
machine-learning pyspark random-forest sampling
machine-learning pyspark random-forest sampling
asked Nov 13 '18 at 2:57
Tushar MehtaTushar Mehta
407
asked Nov 13 '18 at 2:57
Tushar MehtaTushar Mehta
407
asked Nov 13 '18 at 2:57
Tushar MehtaTushar Mehta
407
asked Nov 13 '18 at 2:57
Tushar MehtaTushar Mehta
407
asked Nov 13 '18 at 2:57
Tushar MehtaTushar Mehta
407
407
add a comment |
add a comment |
1 Answer
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The problem is that you are oversampling the whole data frame. You should filter the data from the two classes
df_class_0 = df_train[df_train['label'] == 0]
df_class_1 = df_train[df_train['label'] == 1]
df_class_1_over = df_class_1.sample(count_class_0, replace=True)
df_test_over = pd.concat([df_class_0, df_class_1_over], axis=0)
the example comes from : https://www.kaggle.com/rafjaa/resampling-strategies-for-imbalanced-datasets
Please note that there are better way to perform oversampling (e.g. SMOTE)
answered Nov 13 '18 at 9:37
RobertoRoberto
50210
Thanks a lot for the response, The sample function in pyspark would not take the count of the class.Can I instead use the proportion of class 0 over the entire data set to sample class 1. Would it give the same result. Also, I am not sure if I can use SMOTE in pyspark. I could not find any library to import SMOTE in py-spark documentation. Any idea, how can I use SMOTE in py-spark.
– Tushar Mehta
Nov 13 '18 at 19:59
@TusharMehta just to be clear I'm not a pyspark user. I suppose that you can use the percentage for sampling. Can't you use the standard sample function for the resampling and pass the result to Py-spark function?
– Roberto
Nov 14 '18 at 6:52
add a comment |
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1 Answer
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1 Answer
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The problem is that you are oversampling the whole data frame. You should filter the data from the two classes
df_class_0 = df_train[df_train['label'] == 0]
df_class_1 = df_train[df_train['label'] == 1]
df_class_1_over = df_class_1.sample(count_class_0, replace=True)
df_test_over = pd.concat([df_class_0, df_class_1_over], axis=0)
the example comes from : https://www.kaggle.com/rafjaa/resampling-strategies-for-imbalanced-datasets
Please note that there are better way to perform oversampling (e.g. SMOTE)
answered Nov 13 '18 at 9:37
RobertoRoberto
50210
Thanks a lot for the response, The sample function in pyspark would not take the count of the class.Can I instead use the proportion of class 0 over the entire data set to sample class 1. Would it give the same result. Also, I am not sure if I can use SMOTE in pyspark. I could not find any library to import SMOTE in py-spark documentation. Any idea, how can I use SMOTE in py-spark.
– Tushar Mehta
Nov 13 '18 at 19:59
@TusharMehta just to be clear I'm not a pyspark user. I suppose that you can use the percentage for sampling. Can't you use the standard sample function for the resampling and pass the result to Py-spark function?
– Roberto
Nov 14 '18 at 6:52
add a comment |
The problem is that you are oversampling the whole data frame. You should filter the data from the two classes
df_class_0 = df_train[df_train['label'] == 0]
df_class_1 = df_train[df_train['label'] == 1]
df_class_1_over = df_class_1.sample(count_class_0, replace=True)
df_test_over = pd.concat([df_class_0, df_class_1_over], axis=0)
the example comes from : https://www.kaggle.com/rafjaa/resampling-strategies-for-imbalanced-datasets
Please note that there are better way to perform oversampling (e.g. SMOTE)
answered Nov 13 '18 at 9:37
RobertoRoberto
50210
Thanks a lot for the response, The sample function in pyspark would not take the count of the class.Can I instead use the proportion of class 0 over the entire data set to sample class 1. Would it give the same result. Also, I am not sure if I can use SMOTE in pyspark. I could not find any library to import SMOTE in py-spark documentation. Any idea, how can I use SMOTE in py-spark.
– Tushar Mehta
Nov 13 '18 at 19:59
@TusharMehta just to be clear I'm not a pyspark user. I suppose that you can use the percentage for sampling. Can't you use the standard sample function for the resampling and pass the result to Py-spark function?
– Roberto
Nov 14 '18 at 6:52
add a comment |
The problem is that you are oversampling the whole data frame. You should filter the data from the two classes
df_class_0 = df_train[df_train['label'] == 0]
df_class_1 = df_train[df_train['label'] == 1]
df_class_1_over = df_class_1.sample(count_class_0, replace=True)
df_test_over = pd.concat([df_class_0, df_class_1_over], axis=0)
the example comes from : https://www.kaggle.com/rafjaa/resampling-strategies-for-imbalanced-datasets
Please note that there are better way to perform oversampling (e.g. SMOTE)
answered Nov 13 '18 at 9:37
RobertoRoberto
50210
The problem is that you are oversampling the whole data frame. You should filter the data from the two classes
df_class_0 = df_train[df_train['label'] == 0]
df_class_1 = df_train[df_train['label'] == 1]
df_class_1_over = df_class_1.sample(count_class_0, replace=True)
df_test_over = pd.concat([df_class_0, df_class_1_over], axis=0)
the example comes from : https://www.kaggle.com/rafjaa/resampling-strategies-for-imbalanced-datasets
Please note that there are better way to perform oversampling (e.g. SMOTE)
answered Nov 13 '18 at 9:37
RobertoRoberto
50210
answered Nov 13 '18 at 9:37
RobertoRoberto
50210
answered Nov 13 '18 at 9:37
RobertoRoberto
50210
answered Nov 13 '18 at 9:37
RobertoRoberto
50210
50210
Thanks a lot for the response, The sample function in pyspark would not take the count of the class.Can I instead use the proportion of class 0 over the entire data set to sample class 1. Would it give the same result. Also, I am not sure if I can use SMOTE in pyspark. I could not find any library to import SMOTE in py-spark documentation. Any idea, how can I use SMOTE in py-spark.
– Tushar Mehta
Nov 13 '18 at 19:59
@TusharMehta just to be clear I'm not a pyspark user. I suppose that you can use the percentage for sampling. Can't you use the standard sample function for the resampling and pass the result to Py-spark function?
– Roberto
Nov 14 '18 at 6:52
add a comment |
Thanks a lot for the response, The sample function in pyspark would not take the count of the class.Can I instead use the proportion of class 0 over the entire data set to sample class 1. Would it give the same result. Also, I am not sure if I can use SMOTE in pyspark. I could not find any library to import SMOTE in py-spark documentation. Any idea, how can I use SMOTE in py-spark.
– Tushar Mehta
Nov 13 '18 at 19:59
@TusharMehta just to be clear I'm not a pyspark user. I suppose that you can use the percentage for sampling. Can't you use the standard sample function for the resampling and pass the result to Py-spark function?
– Roberto
Nov 14 '18 at 6:52
Thanks a lot for the response, The sample function in pyspark would not take the count of the class.Can I instead use the proportion of class 0 over the entire data set to sample class 1. Would it give the same result. Also, I am not sure if I can use SMOTE in pyspark. I could not find any library to import SMOTE in py-spark documentation. Any idea, how can I use SMOTE in py-spark.
– Tushar Mehta
Nov 13 '18 at 19:59
Thanks a lot for the response, The sample function in pyspark would not take the count of the class.Can I instead use the proportion of class 0 over the entire data set to sample class 1. Would it give the same result. Also, I am not sure if I can use SMOTE in pyspark. I could not find any library to import SMOTE in py-spark documentation. Any idea, how can I use SMOTE in py-spark.
– Tushar Mehta
Nov 13 '18 at 19:59
@TusharMehta just to be clear I'm not a pyspark user. I suppose that you can use the percentage for sampling. Can't you use the standard sample function for the resampling and pass the result to Py-spark function?
– Roberto
Nov 14 '18 at 6:52
@TusharMehta just to be clear I'm not a pyspark user. I suppose that you can use the percentage for sampling. Can't you use the standard sample function for the resampling and pass the result to Py-spark function?
– Roberto
Nov 14 '18 at 6:52
add a comment |
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