What does MICE LoggedEvents mean?
I am trying to run a multiple imputation using the mice function (from the package of the same name) in R. I get a Warning that events have been logged. Here is the output from mice(.)$loggedEvents from my MWE (see below):
it im dep meth out
1 1 X pmm H
I'm not sure what is causing this warning and what the implications are. From what I understand, this can be caused by collinearity amongst variables, but this should be prevented by using remove_collinear=FALSE, but this isn't fixing the Warning.
MWE:
Pop <- data.frame(X = c( NA, 0.02, -1.15, 0.54, -0.61, -2.07),
Z = c( 0.83, 1.40, -3.07, -0.07, -0.20, -1.90),
D = c( 0, 0, 0, 1, 0, 0),
H = c( 0.01, 0.01, 0.01, 0.01, 0.02, 0.02))
Pop.Imp <- mice(Pop, m = 1, maxit = 1, print = T)
Obviously my original issue involved much more rows and columns of data and a higher number of imputations and iterations, but I've managed to trim this down to find this MWE.
Any help into figuring out what's causing this problem would be great. Is there some sort of cut-off that mice uses when deciding if/when a covariable is collinear? If it's very high, would this override the remove_collinear=FALSE parameter?
r r-mice
asked Nov 20 '18 at 22:00
Michael BarrowmanMichael Barrowman
186
add a comment |
I am trying to run a multiple imputation using the mice function (from the package of the same name) in R. I get a Warning that events have been logged. Here is the output from mice(.)$loggedEvents from my MWE (see below):
it im dep meth out
1 1 X pmm H
I'm not sure what is causing this warning and what the implications are. From what I understand, this can be caused by collinearity amongst variables, but this should be prevented by using remove_collinear=FALSE, but this isn't fixing the Warning.
MWE:
Pop <- data.frame(X = c( NA, 0.02, -1.15, 0.54, -0.61, -2.07),
Z = c( 0.83, 1.40, -3.07, -0.07, -0.20, -1.90),
D = c( 0, 0, 0, 1, 0, 0),
H = c( 0.01, 0.01, 0.01, 0.01, 0.02, 0.02))
Pop.Imp <- mice(Pop, m = 1, maxit = 1, print = T)
Obviously my original issue involved much more rows and columns of data and a higher number of imputations and iterations, but I've managed to trim this down to find this MWE.
Any help into figuring out what's causing this problem would be great. Is there some sort of cut-off that mice uses when deciding if/when a covariable is collinear? If it's very high, would this override the remove_collinear=FALSE parameter?
r r-mice
asked Nov 20 '18 at 22:00
Michael BarrowmanMichael Barrowman
186
add a comment |
I am trying to run a multiple imputation using the mice function (from the package of the same name) in R. I get a Warning that events have been logged. Here is the output from mice(.)$loggedEvents from my MWE (see below):
it im dep meth out
1 1 X pmm H
I'm not sure what is causing this warning and what the implications are. From what I understand, this can be caused by collinearity amongst variables, but this should be prevented by using remove_collinear=FALSE, but this isn't fixing the Warning.
MWE:
Pop <- data.frame(X = c( NA, 0.02, -1.15, 0.54, -0.61, -2.07),
Z = c( 0.83, 1.40, -3.07, -0.07, -0.20, -1.90),
D = c( 0, 0, 0, 1, 0, 0),
H = c( 0.01, 0.01, 0.01, 0.01, 0.02, 0.02))
Pop.Imp <- mice(Pop, m = 1, maxit = 1, print = T)
Obviously my original issue involved much more rows and columns of data and a higher number of imputations and iterations, but I've managed to trim this down to find this MWE.
Any help into figuring out what's causing this problem would be great. Is there some sort of cut-off that mice uses when deciding if/when a covariable is collinear? If it's very high, would this override the remove_collinear=FALSE parameter?
r r-mice
asked Nov 20 '18 at 22:00
Michael BarrowmanMichael Barrowman
186
I am trying to run a multiple imputation using the mice function (from the package of the same name) in R. I get a Warning that events have been logged. Here is the output from mice(.)$loggedEvents from my MWE (see below):
it im dep meth out
1 1 X pmm H
I'm not sure what is causing this warning and what the implications are. From what I understand, this can be caused by collinearity amongst variables, but this should be prevented by using remove_collinear=FALSE, but this isn't fixing the Warning.
MWE:
Pop <- data.frame(X = c( NA, 0.02, -1.15, 0.54, -0.61, -2.07),
Z = c( 0.83, 1.40, -3.07, -0.07, -0.20, -1.90),
D = c( 0, 0, 0, 1, 0, 0),
H = c( 0.01, 0.01, 0.01, 0.01, 0.02, 0.02))
Pop.Imp <- mice(Pop, m = 1, maxit = 1, print = T)
Obviously my original issue involved much more rows and columns of data and a higher number of imputations and iterations, but I've managed to trim this down to find this MWE.
Any help into figuring out what's causing this problem would be great. Is there some sort of cut-off that mice uses when deciding if/when a covariable is collinear? If it's very high, would this override the remove_collinear=FALSE parameter?
r r-mice
r r-mice
asked Nov 20 '18 at 22:00
Michael BarrowmanMichael Barrowman
186
asked Nov 20 '18 at 22:00
Michael BarrowmanMichael Barrowman
186
asked Nov 20 '18 at 22:00
Michael BarrowmanMichael Barrowman
186
asked Nov 20 '18 at 22:00
Michael BarrowmanMichael Barrowman
186
asked Nov 20 '18 at 22:00
Michael BarrowmanMichael Barrowman
186
186
add a comment |
add a comment |
0
active
oldest
votes
Your Answer
StackExchange.ifUsing("editor", function () {
StackExchange.using("externalEditor", function () {
StackExchange.using("snippets", function () {
StackExchange.snippets.init();
});
});
}, "code-snippets");
StackExchange.ready(function() {
var channelOptions = {
tags: "".split(" "),
id: "1"
};
initTagRenderer("".split(" "), "".split(" "), channelOptions);
StackExchange.using("externalEditor", function() {
// Have to fire editor after snippets, if snippets enabled
if (StackExchange.settings.snippets.snippetsEnabled) {
StackExchange.using("snippets", function() {
createEditor();
});
}
else {
createEditor();
}
});
function createEditor() {
StackExchange.prepareEditor({
heartbeatType: 'answer',
autoActivateHeartbeat: false,
convertImagesToLinks: true,
noModals: true,
showLowRepImageUploadWarning: true,
reputationToPostImages: 10,
bindNavPrevention: true,
postfix: "",
imageUploader: {
brandingHtml: "Powered by u003ca class="icon-imgur-white" href="https://imgur.com/"u003eu003c/au003e",
contentPolicyHtml: "User contributions licensed under u003ca href="https://creativecommons.org/licenses/by-sa/3.0/"u003ecc by-sa 3.0 with attribution requiredu003c/au003e u003ca href="https://stackoverflow.com/legal/content-policy"u003e(content policy)u003c/au003e",
allowUrls: true
},
onDemand: true,
discardSelector: ".discard-answer"
,immediatelyShowMarkdownHelp:true
});
}
});
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
StackExchange.ready(
function () {
StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53402245%2fwhat-does-mice-loggedevents-mean%23new-answer', 'question_page');
}
);
Post as a guest
Required, but never shown
0
active
oldest
votes
0
active
oldest
votes
active
oldest
votes
active
oldest
votes
Thanks for contributing an answer to Stack Overflow!
- Please be sure to answer the question. Provide details and share your research!
But avoid …
- Asking for help, clarification, or responding to other answers.
- Making statements based on opinion; back them up with references or personal experience.
To learn more, see our tips on writing great answers.
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
StackExchange.ready(
function () {
StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53402245%2fwhat-does-mice-loggedevents-mean%23new-answer', 'question_page');
}
);
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
