SessionRunHook returning empty SessionRunValues after run












1















I'm trying to write a hook that will allow me to compute some global metrics (rather than batch-wise metrics). To prototype, I thought I'd get a simple hook up and running that would capture and remember true positives. It looks like this:



class TPHook(tf.train.SessionRunHook):

def after_create_session(self, session, coord):
print("Starting Hook")

tp_name = 'metrics/f1_macro/TP'
self.tp =
self.args = session.graph.get_operation_by_name(tp_name)
print(f"Got Args: {self.args}")

def before_run(self, run_context):
print("Starting Before Run")
return tf.train.SessionRunArgs(self.args)

def after_run(self, run_context, run_values):
print("After Run")
print(f"Got Values: {run_values.results}")


However, the values returned in the "after_run" part of the hook are always None. I tested this in both the train and evaluation phase. Am I misunderstanding something about how the SessionRunHooks are supposed to work?





Maybe relevant information:
The model was build in keras and converted to an estimator with the keras.estimator.model_to_estimator() function. The model has been tested and works fine, and the op that I'm trying to retrieve in the hook is defined in this code block:



def _f1_macro_vector(y_true, y_pred):
"""Computes the F1-score with Macro averaging.

Arguments:
y_true {tf.Tensor} -- Ground-truth labels
y_pred {tf.Tensor} -- Predicted labels

Returns:
tf.Tensor -- The computed F1-Score
"""
y_true = K.cast(y_true, tf.float64)
y_pred = K.cast(y_pred, tf.float64)

TP = tf.reduce_sum(y_true * K.round(y_pred), axis=0, name='TP')
FN = tf.reduce_sum(y_true * (1 - K.round(y_pred)), axis=0, name='FN')
FP = tf.reduce_sum((1 - y_true) * K.round(y_pred), axis=0, name='FP')

prec = TP / (TP + FP)
rec = TP / (TP + FN)

# Convert NaNs to Zero
prec = tf.where(tf.is_nan(prec), tf.zeros_like(prec), prec)
rec = tf.where(tf.is_nan(rec), tf.zeros_like(rec), rec)

f1 = 2 * (prec * rec) / (prec + rec)

# Convert NaN to Zero
f1 = tf.where(tf.is_nan(f1), tf.zeros_like(f1), f1)

return f1









share|improve this question



























    1















    I'm trying to write a hook that will allow me to compute some global metrics (rather than batch-wise metrics). To prototype, I thought I'd get a simple hook up and running that would capture and remember true positives. It looks like this:



    class TPHook(tf.train.SessionRunHook):

    def after_create_session(self, session, coord):
    print("Starting Hook")

    tp_name = 'metrics/f1_macro/TP'
    self.tp =
    self.args = session.graph.get_operation_by_name(tp_name)
    print(f"Got Args: {self.args}")

    def before_run(self, run_context):
    print("Starting Before Run")
    return tf.train.SessionRunArgs(self.args)

    def after_run(self, run_context, run_values):
    print("After Run")
    print(f"Got Values: {run_values.results}")


    However, the values returned in the "after_run" part of the hook are always None. I tested this in both the train and evaluation phase. Am I misunderstanding something about how the SessionRunHooks are supposed to work?





    Maybe relevant information:
    The model was build in keras and converted to an estimator with the keras.estimator.model_to_estimator() function. The model has been tested and works fine, and the op that I'm trying to retrieve in the hook is defined in this code block:



    def _f1_macro_vector(y_true, y_pred):
    """Computes the F1-score with Macro averaging.

    Arguments:
    y_true {tf.Tensor} -- Ground-truth labels
    y_pred {tf.Tensor} -- Predicted labels

    Returns:
    tf.Tensor -- The computed F1-Score
    """
    y_true = K.cast(y_true, tf.float64)
    y_pred = K.cast(y_pred, tf.float64)

    TP = tf.reduce_sum(y_true * K.round(y_pred), axis=0, name='TP')
    FN = tf.reduce_sum(y_true * (1 - K.round(y_pred)), axis=0, name='FN')
    FP = tf.reduce_sum((1 - y_true) * K.round(y_pred), axis=0, name='FP')

    prec = TP / (TP + FP)
    rec = TP / (TP + FN)

    # Convert NaNs to Zero
    prec = tf.where(tf.is_nan(prec), tf.zeros_like(prec), prec)
    rec = tf.where(tf.is_nan(rec), tf.zeros_like(rec), rec)

    f1 = 2 * (prec * rec) / (prec + rec)

    # Convert NaN to Zero
    f1 = tf.where(tf.is_nan(f1), tf.zeros_like(f1), f1)

    return f1









    share|improve this question

























      1












      1








      1








      I'm trying to write a hook that will allow me to compute some global metrics (rather than batch-wise metrics). To prototype, I thought I'd get a simple hook up and running that would capture and remember true positives. It looks like this:



      class TPHook(tf.train.SessionRunHook):

      def after_create_session(self, session, coord):
      print("Starting Hook")

      tp_name = 'metrics/f1_macro/TP'
      self.tp =
      self.args = session.graph.get_operation_by_name(tp_name)
      print(f"Got Args: {self.args}")

      def before_run(self, run_context):
      print("Starting Before Run")
      return tf.train.SessionRunArgs(self.args)

      def after_run(self, run_context, run_values):
      print("After Run")
      print(f"Got Values: {run_values.results}")


      However, the values returned in the "after_run" part of the hook are always None. I tested this in both the train and evaluation phase. Am I misunderstanding something about how the SessionRunHooks are supposed to work?





      Maybe relevant information:
      The model was build in keras and converted to an estimator with the keras.estimator.model_to_estimator() function. The model has been tested and works fine, and the op that I'm trying to retrieve in the hook is defined in this code block:



      def _f1_macro_vector(y_true, y_pred):
      """Computes the F1-score with Macro averaging.

      Arguments:
      y_true {tf.Tensor} -- Ground-truth labels
      y_pred {tf.Tensor} -- Predicted labels

      Returns:
      tf.Tensor -- The computed F1-Score
      """
      y_true = K.cast(y_true, tf.float64)
      y_pred = K.cast(y_pred, tf.float64)

      TP = tf.reduce_sum(y_true * K.round(y_pred), axis=0, name='TP')
      FN = tf.reduce_sum(y_true * (1 - K.round(y_pred)), axis=0, name='FN')
      FP = tf.reduce_sum((1 - y_true) * K.round(y_pred), axis=0, name='FP')

      prec = TP / (TP + FP)
      rec = TP / (TP + FN)

      # Convert NaNs to Zero
      prec = tf.where(tf.is_nan(prec), tf.zeros_like(prec), prec)
      rec = tf.where(tf.is_nan(rec), tf.zeros_like(rec), rec)

      f1 = 2 * (prec * rec) / (prec + rec)

      # Convert NaN to Zero
      f1 = tf.where(tf.is_nan(f1), tf.zeros_like(f1), f1)

      return f1









      share|improve this question














      I'm trying to write a hook that will allow me to compute some global metrics (rather than batch-wise metrics). To prototype, I thought I'd get a simple hook up and running that would capture and remember true positives. It looks like this:



      class TPHook(tf.train.SessionRunHook):

      def after_create_session(self, session, coord):
      print("Starting Hook")

      tp_name = 'metrics/f1_macro/TP'
      self.tp =
      self.args = session.graph.get_operation_by_name(tp_name)
      print(f"Got Args: {self.args}")

      def before_run(self, run_context):
      print("Starting Before Run")
      return tf.train.SessionRunArgs(self.args)

      def after_run(self, run_context, run_values):
      print("After Run")
      print(f"Got Values: {run_values.results}")


      However, the values returned in the "after_run" part of the hook are always None. I tested this in both the train and evaluation phase. Am I misunderstanding something about how the SessionRunHooks are supposed to work?





      Maybe relevant information:
      The model was build in keras and converted to an estimator with the keras.estimator.model_to_estimator() function. The model has been tested and works fine, and the op that I'm trying to retrieve in the hook is defined in this code block:



      def _f1_macro_vector(y_true, y_pred):
      """Computes the F1-score with Macro averaging.

      Arguments:
      y_true {tf.Tensor} -- Ground-truth labels
      y_pred {tf.Tensor} -- Predicted labels

      Returns:
      tf.Tensor -- The computed F1-Score
      """
      y_true = K.cast(y_true, tf.float64)
      y_pred = K.cast(y_pred, tf.float64)

      TP = tf.reduce_sum(y_true * K.round(y_pred), axis=0, name='TP')
      FN = tf.reduce_sum(y_true * (1 - K.round(y_pred)), axis=0, name='FN')
      FP = tf.reduce_sum((1 - y_true) * K.round(y_pred), axis=0, name='FP')

      prec = TP / (TP + FP)
      rec = TP / (TP + FN)

      # Convert NaNs to Zero
      prec = tf.where(tf.is_nan(prec), tf.zeros_like(prec), prec)
      rec = tf.where(tf.is_nan(rec), tf.zeros_like(rec), rec)

      f1 = 2 * (prec * rec) / (prec + rec)

      # Convert NaN to Zero
      f1 = tf.where(tf.is_nan(f1), tf.zeros_like(f1), f1)

      return f1






      python-3.x tensorflow keras tensorflow-estimator






      share|improve this question













      share|improve this question











      share|improve this question




      share|improve this question










      asked Nov 8 '18 at 23:12









      mattdeakmattdeak

      13810




      13810
























          1 Answer
          1






          active

          oldest

          votes


















          0














          In case anyone runs into the same problem, I found out how to restructure the program so that it worked. Although the documentation makes it sound like I can pass raw ops into the SessionRunArgs, it seems like it requires actual tensors (maybe this is a misreading on my part).
          This is pretty easy to accomplish - I just changed the after_create_session code to what's shown below.



          def after_create_session(self, session, coord):

          tp_name = 'metrics/f1_macro/TP'
          self.tp =
          tp_tensor = session.graph.get_tensor_by_name(tp_name+':0')

          self.args = [tp_tensor]


          And this successfully runs.






          share|improve this answer























            Your Answer






            StackExchange.ifUsing("editor", function () {
            StackExchange.using("externalEditor", function () {
            StackExchange.using("snippets", function () {
            StackExchange.snippets.init();
            });
            });
            }, "code-snippets");

            StackExchange.ready(function() {
            var channelOptions = {
            tags: "".split(" "),
            id: "1"
            };
            initTagRenderer("".split(" "), "".split(" "), channelOptions);

            StackExchange.using("externalEditor", function() {
            // Have to fire editor after snippets, if snippets enabled
            if (StackExchange.settings.snippets.snippetsEnabled) {
            StackExchange.using("snippets", function() {
            createEditor();
            });
            }
            else {
            createEditor();
            }
            });

            function createEditor() {
            StackExchange.prepareEditor({
            heartbeatType: 'answer',
            autoActivateHeartbeat: false,
            convertImagesToLinks: true,
            noModals: true,
            showLowRepImageUploadWarning: true,
            reputationToPostImages: 10,
            bindNavPrevention: true,
            postfix: "",
            imageUploader: {
            brandingHtml: "Powered by u003ca class="icon-imgur-white" href="https://imgur.com/"u003eu003c/au003e",
            contentPolicyHtml: "User contributions licensed under u003ca href="https://creativecommons.org/licenses/by-sa/3.0/"u003ecc by-sa 3.0 with attribution requiredu003c/au003e u003ca href="https://stackoverflow.com/legal/content-policy"u003e(content policy)u003c/au003e",
            allowUrls: true
            },
            onDemand: true,
            discardSelector: ".discard-answer"
            ,immediatelyShowMarkdownHelp:true
            });


            }
            });














            draft saved

            draft discarded


















            StackExchange.ready(
            function () {
            StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53217564%2fsessionrunhook-returning-empty-sessionrunvalues-after-run%23new-answer', 'question_page');
            }
            );

            Post as a guest















            Required, but never shown

























            1 Answer
            1






            active

            oldest

            votes








            1 Answer
            1






            active

            oldest

            votes









            active

            oldest

            votes






            active

            oldest

            votes









            0














            In case anyone runs into the same problem, I found out how to restructure the program so that it worked. Although the documentation makes it sound like I can pass raw ops into the SessionRunArgs, it seems like it requires actual tensors (maybe this is a misreading on my part).
            This is pretty easy to accomplish - I just changed the after_create_session code to what's shown below.



            def after_create_session(self, session, coord):

            tp_name = 'metrics/f1_macro/TP'
            self.tp =
            tp_tensor = session.graph.get_tensor_by_name(tp_name+':0')

            self.args = [tp_tensor]


            And this successfully runs.






            share|improve this answer




























              0














              In case anyone runs into the same problem, I found out how to restructure the program so that it worked. Although the documentation makes it sound like I can pass raw ops into the SessionRunArgs, it seems like it requires actual tensors (maybe this is a misreading on my part).
              This is pretty easy to accomplish - I just changed the after_create_session code to what's shown below.



              def after_create_session(self, session, coord):

              tp_name = 'metrics/f1_macro/TP'
              self.tp =
              tp_tensor = session.graph.get_tensor_by_name(tp_name+':0')

              self.args = [tp_tensor]


              And this successfully runs.






              share|improve this answer


























                0












                0








                0







                In case anyone runs into the same problem, I found out how to restructure the program so that it worked. Although the documentation makes it sound like I can pass raw ops into the SessionRunArgs, it seems like it requires actual tensors (maybe this is a misreading on my part).
                This is pretty easy to accomplish - I just changed the after_create_session code to what's shown below.



                def after_create_session(self, session, coord):

                tp_name = 'metrics/f1_macro/TP'
                self.tp =
                tp_tensor = session.graph.get_tensor_by_name(tp_name+':0')

                self.args = [tp_tensor]


                And this successfully runs.






                share|improve this answer













                In case anyone runs into the same problem, I found out how to restructure the program so that it worked. Although the documentation makes it sound like I can pass raw ops into the SessionRunArgs, it seems like it requires actual tensors (maybe this is a misreading on my part).
                This is pretty easy to accomplish - I just changed the after_create_session code to what's shown below.



                def after_create_session(self, session, coord):

                tp_name = 'metrics/f1_macro/TP'
                self.tp =
                tp_tensor = session.graph.get_tensor_by_name(tp_name+':0')

                self.args = [tp_tensor]


                And this successfully runs.







                share|improve this answer












                share|improve this answer



                share|improve this answer










                answered Nov 13 '18 at 20:40









                mattdeakmattdeak

                13810




                13810






























                    draft saved

                    draft discarded




















































                    Thanks for contributing an answer to Stack Overflow!


                    • Please be sure to answer the question. Provide details and share your research!

                    But avoid



                    • Asking for help, clarification, or responding to other answers.

                    • Making statements based on opinion; back them up with references or personal experience.


                    To learn more, see our tips on writing great answers.




                    draft saved


                    draft discarded














                    StackExchange.ready(
                    function () {
                    StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53217564%2fsessionrunhook-returning-empty-sessionrunvalues-after-run%23new-answer', 'question_page');
                    }
                    );

                    Post as a guest















                    Required, but never shown





















































                    Required, but never shown














                    Required, but never shown












                    Required, but never shown







                    Required, but never shown

































                    Required, but never shown














                    Required, but never shown












                    Required, but never shown







                    Required, but never shown







                    這個網誌中的熱門文章

                    Xamarin.form Move up view when keyboard appear

                    Post-Redirect-Get with Spring WebFlux and Thymeleaf

                    Anylogic : not able to use stopDelay()