R markdown pandoc document conversion failed with error 1 after updating pandoc from 1.19 to 2.4
I recently installed pandoc 2.4 on Windows and the conversion failed with error 1 occurs for all knitting. I can't knit html, word, and pdf.
The error says
output file: template.knitmd
pandoc.exe: template.utf8.md: openBinaryFile: does not exist (No such file or directory)
Error: pandoc document conversion failed with error 1
Execusion halted
This happens to even the raw basic template rmd file.
I am using a closed network without internet connection and limited writing permission. Previously I was able to knit rmd files located in documents folder generating outputs in same location.
The sessionInfo() says
R version 3.5.1 (2018-07-02)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: windows >=8 x64 (build 9200)
Matrix products: default
locale:
[1] LC_collate=english_united states.1252 lc_ctype=english_united states.1252 lc_monetary=english_united states.1252
[4] LC_Numeric=C LC_TIME=english_united states.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] flextable_0.4.5 officer_0.3.2 knitr_1.20 rmarkdown_1.10
loaded via a namespace (and not attached):
[1] Rcpp_1.0.0 digest_0.6.18 rprojroot_1.3-2 R6_2.3.0 backports_1.1.2 magrittr_1.5 evaluate_0.12
[8]zip_1.0.0 stringi_1.2.4 gdtools_0.1.7 uuid_0.1-2 xml2_1.2.0 tools_3.5.1 stringr_1.3.1
[15] yaml_2.2.0 compiler_3.5.1 base64enc_0.1-3 htmltools_0.3.6
Any advice will be highly appreciated. (Or even ways how to change the settings back to old pandoc version without deleting the version 2.4.)
rstudio r-markdown knitr pandoc document-conversion
add a comment |
I recently installed pandoc 2.4 on Windows and the conversion failed with error 1 occurs for all knitting. I can't knit html, word, and pdf.
The error says
output file: template.knitmd
pandoc.exe: template.utf8.md: openBinaryFile: does not exist (No such file or directory)
Error: pandoc document conversion failed with error 1
Execusion halted
This happens to even the raw basic template rmd file.
I am using a closed network without internet connection and limited writing permission. Previously I was able to knit rmd files located in documents folder generating outputs in same location.
The sessionInfo() says
R version 3.5.1 (2018-07-02)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: windows >=8 x64 (build 9200)
Matrix products: default
locale:
[1] LC_collate=english_united states.1252 lc_ctype=english_united states.1252 lc_monetary=english_united states.1252
[4] LC_Numeric=C LC_TIME=english_united states.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] flextable_0.4.5 officer_0.3.2 knitr_1.20 rmarkdown_1.10
loaded via a namespace (and not attached):
[1] Rcpp_1.0.0 digest_0.6.18 rprojroot_1.3-2 R6_2.3.0 backports_1.1.2 magrittr_1.5 evaluate_0.12
[8]zip_1.0.0 stringi_1.2.4 gdtools_0.1.7 uuid_0.1-2 xml2_1.2.0 tools_3.5.1 stringr_1.3.1
[15] yaml_2.2.0 compiler_3.5.1 base64enc_0.1-3 htmltools_0.3.6
Any advice will be highly appreciated. (Or even ways how to change the settings back to old pandoc version without deleting the version 2.4.)
rstudio r-markdown knitr pandoc document-conversion
I had the same problem after updating. I'm unable to knit if the files are stored on any network drive. I'm able to knit if they are stored on a local drive.
– Adam Sampson
Nov 21 '18 at 15:13
@AdamSampson I resolved this by redirecting to a network drive where I was given full permission to write and edit files.
– Moses Kim
Nov 27 '18 at 19:59
add a comment |
I recently installed pandoc 2.4 on Windows and the conversion failed with error 1 occurs for all knitting. I can't knit html, word, and pdf.
The error says
output file: template.knitmd
pandoc.exe: template.utf8.md: openBinaryFile: does not exist (No such file or directory)
Error: pandoc document conversion failed with error 1
Execusion halted
This happens to even the raw basic template rmd file.
I am using a closed network without internet connection and limited writing permission. Previously I was able to knit rmd files located in documents folder generating outputs in same location.
The sessionInfo() says
R version 3.5.1 (2018-07-02)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: windows >=8 x64 (build 9200)
Matrix products: default
locale:
[1] LC_collate=english_united states.1252 lc_ctype=english_united states.1252 lc_monetary=english_united states.1252
[4] LC_Numeric=C LC_TIME=english_united states.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] flextable_0.4.5 officer_0.3.2 knitr_1.20 rmarkdown_1.10
loaded via a namespace (and not attached):
[1] Rcpp_1.0.0 digest_0.6.18 rprojroot_1.3-2 R6_2.3.0 backports_1.1.2 magrittr_1.5 evaluate_0.12
[8]zip_1.0.0 stringi_1.2.4 gdtools_0.1.7 uuid_0.1-2 xml2_1.2.0 tools_3.5.1 stringr_1.3.1
[15] yaml_2.2.0 compiler_3.5.1 base64enc_0.1-3 htmltools_0.3.6
Any advice will be highly appreciated. (Or even ways how to change the settings back to old pandoc version without deleting the version 2.4.)
rstudio r-markdown knitr pandoc document-conversion
I recently installed pandoc 2.4 on Windows and the conversion failed with error 1 occurs for all knitting. I can't knit html, word, and pdf.
The error says
output file: template.knitmd
pandoc.exe: template.utf8.md: openBinaryFile: does not exist (No such file or directory)
Error: pandoc document conversion failed with error 1
Execusion halted
This happens to even the raw basic template rmd file.
I am using a closed network without internet connection and limited writing permission. Previously I was able to knit rmd files located in documents folder generating outputs in same location.
The sessionInfo() says
R version 3.5.1 (2018-07-02)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: windows >=8 x64 (build 9200)
Matrix products: default
locale:
[1] LC_collate=english_united states.1252 lc_ctype=english_united states.1252 lc_monetary=english_united states.1252
[4] LC_Numeric=C LC_TIME=english_united states.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] flextable_0.4.5 officer_0.3.2 knitr_1.20 rmarkdown_1.10
loaded via a namespace (and not attached):
[1] Rcpp_1.0.0 digest_0.6.18 rprojroot_1.3-2 R6_2.3.0 backports_1.1.2 magrittr_1.5 evaluate_0.12
[8]zip_1.0.0 stringi_1.2.4 gdtools_0.1.7 uuid_0.1-2 xml2_1.2.0 tools_3.5.1 stringr_1.3.1
[15] yaml_2.2.0 compiler_3.5.1 base64enc_0.1-3 htmltools_0.3.6
Any advice will be highly appreciated. (Or even ways how to change the settings back to old pandoc version without deleting the version 2.4.)
rstudio r-markdown knitr pandoc document-conversion
rstudio r-markdown knitr pandoc document-conversion
edited Nov 20 '18 at 10:46
Ralf Stubner
14.4k21537
14.4k21537
asked Nov 19 '18 at 23:24
Moses KimMoses Kim
111
111
I had the same problem after updating. I'm unable to knit if the files are stored on any network drive. I'm able to knit if they are stored on a local drive.
– Adam Sampson
Nov 21 '18 at 15:13
@AdamSampson I resolved this by redirecting to a network drive where I was given full permission to write and edit files.
– Moses Kim
Nov 27 '18 at 19:59
add a comment |
I had the same problem after updating. I'm unable to knit if the files are stored on any network drive. I'm able to knit if they are stored on a local drive.
– Adam Sampson
Nov 21 '18 at 15:13
@AdamSampson I resolved this by redirecting to a network drive where I was given full permission to write and edit files.
– Moses Kim
Nov 27 '18 at 19:59
I had the same problem after updating. I'm unable to knit if the files are stored on any network drive. I'm able to knit if they are stored on a local drive.
– Adam Sampson
Nov 21 '18 at 15:13
I had the same problem after updating. I'm unable to knit if the files are stored on any network drive. I'm able to knit if they are stored on a local drive.
– Adam Sampson
Nov 21 '18 at 15:13
@AdamSampson I resolved this by redirecting to a network drive where I was given full permission to write and edit files.
– Moses Kim
Nov 27 '18 at 19:59
@AdamSampson I resolved this by redirecting to a network drive where I was given full permission to write and edit files.
– Moses Kim
Nov 27 '18 at 19:59
add a comment |
0
active
oldest
votes
Your Answer
StackExchange.ifUsing("editor", function () {
StackExchange.using("externalEditor", function () {
StackExchange.using("snippets", function () {
StackExchange.snippets.init();
});
});
}, "code-snippets");
StackExchange.ready(function() {
var channelOptions = {
tags: "".split(" "),
id: "1"
};
initTagRenderer("".split(" "), "".split(" "), channelOptions);
StackExchange.using("externalEditor", function() {
// Have to fire editor after snippets, if snippets enabled
if (StackExchange.settings.snippets.snippetsEnabled) {
StackExchange.using("snippets", function() {
createEditor();
});
}
else {
createEditor();
}
});
function createEditor() {
StackExchange.prepareEditor({
heartbeatType: 'answer',
autoActivateHeartbeat: false,
convertImagesToLinks: true,
noModals: true,
showLowRepImageUploadWarning: true,
reputationToPostImages: 10,
bindNavPrevention: true,
postfix: "",
imageUploader: {
brandingHtml: "Powered by u003ca class="icon-imgur-white" href="https://imgur.com/"u003eu003c/au003e",
contentPolicyHtml: "User contributions licensed under u003ca href="https://creativecommons.org/licenses/by-sa/3.0/"u003ecc by-sa 3.0 with attribution requiredu003c/au003e u003ca href="https://stackoverflow.com/legal/content-policy"u003e(content policy)u003c/au003e",
allowUrls: true
},
onDemand: true,
discardSelector: ".discard-answer"
,immediatelyShowMarkdownHelp:true
});
}
});
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
StackExchange.ready(
function () {
StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53384091%2fr-markdown-pandoc-document-conversion-failed-with-error-1-after-updating-pandoc%23new-answer', 'question_page');
}
);
Post as a guest
Required, but never shown
0
active
oldest
votes
0
active
oldest
votes
active
oldest
votes
active
oldest
votes
Thanks for contributing an answer to Stack Overflow!
- Please be sure to answer the question. Provide details and share your research!
But avoid …
- Asking for help, clarification, or responding to other answers.
- Making statements based on opinion; back them up with references or personal experience.
To learn more, see our tips on writing great answers.
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
StackExchange.ready(
function () {
StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53384091%2fr-markdown-pandoc-document-conversion-failed-with-error-1-after-updating-pandoc%23new-answer', 'question_page');
}
);
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
I had the same problem after updating. I'm unable to knit if the files are stored on any network drive. I'm able to knit if they are stored on a local drive.
– Adam Sampson
Nov 21 '18 at 15:13
@AdamSampson I resolved this by redirecting to a network drive where I was given full permission to write and edit files.
– Moses Kim
Nov 27 '18 at 19:59