error linking stdlib.h when building OpenCV on a Chromebook

Configuration seems to run successfully...

cmake -D CMAKE_BUILD_TYPE=Release -D CMAKE_INSTALL_PREFIX=/usr/local ..

-- The CXX compiler identification is GNU 7.3.0



-- The C compiler identification is GNU 7.3.0

-- Check for working CXX compiler: /usr/local/bin/c++

-- Check for working CXX compiler: /usr/local/bin/c++ -- works

(etc)

then when I run make install,

chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo make install

Scanning dependencies of target gen-pkgconfig

[  0%] Generate opencv.pc

[  0%] Built target gen-pkgconfig

Scanning dependencies of target libjpeg-turbo

[  0%] Building C object 3rdparty/libjpeg-turbo/CMakeFiles/libjpeg-turbo.dir/src/jcapimin.c.o

[  0%] Building C object 3rdparty/libjpeg-turbo/CMakeFiles/libjpeg-turbo.dir/src/jcapistd.c.o`



(etc)



`[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_print.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_read.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_strip.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_swab.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_thunder.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_tile.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_version.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_warning.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_write.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_zip.c.o

[  5%] Building CXX object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_stream.cxx.o

In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,

                 from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,

                 from /usr/local/include/c++/7.3.0/string:52,

                 from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,

                 from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,

                 from /usr/local/include/c++/7.3.0/ios:42,

                 from /usr/local/include/c++/7.3.0/ostream:38,

                 from /usr/local/include/c++/7.3.0/iostream:39,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/libtiff/tiffio.hxx:34,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/libtiff/tif_stream.cxx:31:

/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory

 #include_next <stdlib.h>

               ^~~~~~~~~~

compilation terminated.

make[2]: *** [3rdparty/libtiff/CMakeFiles/libtiff.dir/build.make:557: 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_stream.cxx.o] Error 1

make[1]: *** [CMakeFiles/Makefile2:387: 3rdparty/libtiff/CMakeFiles/libtiff.dir/all] Error 2

make: *** [Makefile:163: all] Error 2

I have tried disabling 3rd party libraries and it fails later on, with the same error for a different component.

chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo make install

[  0%] Generate opencv.pc

[  0%] Built target gen-pkgconfig

[  9%] Built target libwebp

[ 11%] Built target libjasper

[ 13%] Built target libpng

[ 13%] Building CXX object 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o

In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,

                 from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,

                 from /usr/local/include/c++/7.3.0/string:52,

                 from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,

                 from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,

                 from /usr/local/include/c++/7.3.0/ios:42,

                 from /usr/local/include/c++/7.3.0/ostream:38,

                 from /usr/local/include/c++/7.3.0/iostream:39,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.h:88,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp:48:

/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory

 #include_next <stdlib.h>

               ^~~~~~~~~~

compilation terminated.

Versions and library appear fine...

chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ gcc --version

gcc (GCC) 7.3.0

Copyright (C) 2017 Free Software Foundation, Inc.

This is free software; see the source for copying conditions.  There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.



chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo find / -type f -name "*stdlib.h"

/usr/local/include/stdlib.h

/usr/local/include/bits/stdlib.h

/usr/local/include/c++/7.3.0/stdlib.h

/usr/local/include/c++/7.3.0/tr1/stdlib.h

/mnt/stateful_partition/dev_image/include/stdlib.h

/mnt/stateful_partition/dev_image/include/bits/stdlib.h

/mnt/stateful_partition/dev_image/include/c++/7.3.0/stdlib.h

/mnt/stateful_partition/dev_image/include/c++/7.3.0/tr1/stdlib.h

with VERBOSE=1,

make -f 3rdparty/openexr/CMakeFiles/IlmImf.dir/build.make 3rdparty/openexr/CMakeFiles/IlmImf.dir/build

make[2]: Entering directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'

[ 12%] Building CXX object 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o

cd /home/chronos/user/Downloads/python/opencv-3.4.3/build/3rdparty/openexr && /usr/local/bin/c++   -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/IlmImf -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Imath -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/IlmThread -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Iex -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half -I/home/chronos/user/Downloads/python/opencv-3.4.3/build/3rdparty/openexr -I/home/chronos/user/Downloads/python/opencv-3.4.3/build -isystem /usr/local/include  -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security   -Winit-self -Wpointer-arith  -Wsign-promo  -Winit-self -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-comment  -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffunction-sections -fdata-sections  -msse -msse2 -msse3 -fvisibility=hidden -fvisibility-inlines-hidden -Wno-shadow -Wno-unused -Wno-sign-compare -Wno-undef -Wno-missing-declarations -Wno-uninitialized -Wno-switch -Wno-parentheses -Wno-array-bounds -Wno-extra -Wno-deprecated-declarations -Wno-misleading-indentation -Wno-deprecated -Wno-suggest-override -Wno-implicit-fallthrough -O3 -DNDEBUG  -DNDEBUG -fPIC   -o CMakeFiles/IlmImf.dir/Half/half.cpp.o -c /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp

In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,

                 from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,

                 from /usr/local/include/c++/7.3.0/string:52,

                 from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,

                 from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,

                 from /usr/local/include/c++/7.3.0/ios:42,

                 from /usr/local/include/c++/7.3.0/ostream:38,

                 from /usr/local/include/c++/7.3.0/iostream:39,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.h:88,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp:48:

/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory

 #include_next <stdlib.h>

               ^~~~~~~~~~

compilation terminated.

make[2]: *** [3rdparty/openexr/CMakeFiles/IlmImf.dir/build.make:63: 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o] Error 1

make[2]: Leaving directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'

make[1]: *** [CMakeFiles/Makefile2:442: 3rdparty/openexr/CMakeFiles/IlmImf.dir/all] Error 2

make[1]: Leaving directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'

make: *** [Makefile:163: all] Error 2

edited Nov 14 '18 at 2:57

asked Nov 13 '18 at 21:08

JAL

17.6k13759

It would be interesting to check make VERBOSE=1 output - it will show exact command line used for compilation. BTW, I understand why do you use sudo for make install, but why do you use sudo for make too?

– Tsyvarev
Nov 13 '18 at 22:04

@Tsyvarev thanks, I will include that output. I think I only used sudo for make install (there are two outputs there) and the initial one, the cmake command, was run without sudo.

– JAL
Nov 14 '18 at 2:54

output with VERBOSE=1 added. Based on my research, this has something to do with the -isystem in the command, but I don't know enough about c++ to fix it.

– JAL
Nov 14 '18 at 2:57

Yes, according to other cases with similar error message, -isystem plays a role in that. There is CMakeCache.txt file in the build directory, does it contain a string /usr/local/include?

– Tsyvarev
Nov 14 '18 at 7:25

@Tsyvarev yes, there are many occurrences of that path in CMakeCache.txt.

– JAL
Nov 14 '18 at 14:28

add a comment |

Configuration seems to run successfully...

cmake -D CMAKE_BUILD_TYPE=Release -D CMAKE_INSTALL_PREFIX=/usr/local ..

-- The CXX compiler identification is GNU 7.3.0



-- The C compiler identification is GNU 7.3.0

-- Check for working CXX compiler: /usr/local/bin/c++

-- Check for working CXX compiler: /usr/local/bin/c++ -- works

(etc)

then when I run make install,

chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo make install

Scanning dependencies of target gen-pkgconfig

[  0%] Generate opencv.pc

[  0%] Built target gen-pkgconfig

Scanning dependencies of target libjpeg-turbo

[  0%] Building C object 3rdparty/libjpeg-turbo/CMakeFiles/libjpeg-turbo.dir/src/jcapimin.c.o

[  0%] Building C object 3rdparty/libjpeg-turbo/CMakeFiles/libjpeg-turbo.dir/src/jcapistd.c.o`



(etc)



`[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_print.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_read.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_strip.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_swab.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_thunder.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_tile.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_version.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_warning.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_write.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_zip.c.o

[  5%] Building CXX object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_stream.cxx.o

In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,

                 from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,

                 from /usr/local/include/c++/7.3.0/string:52,

                 from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,

                 from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,

                 from /usr/local/include/c++/7.3.0/ios:42,

                 from /usr/local/include/c++/7.3.0/ostream:38,

                 from /usr/local/include/c++/7.3.0/iostream:39,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/libtiff/tiffio.hxx:34,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/libtiff/tif_stream.cxx:31:

/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory

 #include_next <stdlib.h>

               ^~~~~~~~~~

compilation terminated.

make[2]: *** [3rdparty/libtiff/CMakeFiles/libtiff.dir/build.make:557: 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_stream.cxx.o] Error 1

make[1]: *** [CMakeFiles/Makefile2:387: 3rdparty/libtiff/CMakeFiles/libtiff.dir/all] Error 2

make: *** [Makefile:163: all] Error 2

I have tried disabling 3rd party libraries and it fails later on, with the same error for a different component.

chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo make install

[  0%] Generate opencv.pc

[  0%] Built target gen-pkgconfig

[  9%] Built target libwebp

[ 11%] Built target libjasper

[ 13%] Built target libpng

[ 13%] Building CXX object 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o

In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,

                 from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,

                 from /usr/local/include/c++/7.3.0/string:52,

                 from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,

                 from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,

                 from /usr/local/include/c++/7.3.0/ios:42,

                 from /usr/local/include/c++/7.3.0/ostream:38,

                 from /usr/local/include/c++/7.3.0/iostream:39,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.h:88,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp:48:

/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory

 #include_next <stdlib.h>

               ^~~~~~~~~~

compilation terminated.

Versions and library appear fine...

chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ gcc --version

gcc (GCC) 7.3.0

Copyright (C) 2017 Free Software Foundation, Inc.

This is free software; see the source for copying conditions.  There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.



chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo find / -type f -name "*stdlib.h"

/usr/local/include/stdlib.h

/usr/local/include/bits/stdlib.h

/usr/local/include/c++/7.3.0/stdlib.h

/usr/local/include/c++/7.3.0/tr1/stdlib.h

/mnt/stateful_partition/dev_image/include/stdlib.h

/mnt/stateful_partition/dev_image/include/bits/stdlib.h

/mnt/stateful_partition/dev_image/include/c++/7.3.0/stdlib.h

/mnt/stateful_partition/dev_image/include/c++/7.3.0/tr1/stdlib.h

with VERBOSE=1,

make -f 3rdparty/openexr/CMakeFiles/IlmImf.dir/build.make 3rdparty/openexr/CMakeFiles/IlmImf.dir/build

make[2]: Entering directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'

[ 12%] Building CXX object 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o

cd /home/chronos/user/Downloads/python/opencv-3.4.3/build/3rdparty/openexr && /usr/local/bin/c++   -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/IlmImf -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Imath -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/IlmThread -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Iex -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half -I/home/chronos/user/Downloads/python/opencv-3.4.3/build/3rdparty/openexr -I/home/chronos/user/Downloads/python/opencv-3.4.3/build -isystem /usr/local/include  -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security   -Winit-self -Wpointer-arith  -Wsign-promo  -Winit-self -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-comment  -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffunction-sections -fdata-sections  -msse -msse2 -msse3 -fvisibility=hidden -fvisibility-inlines-hidden -Wno-shadow -Wno-unused -Wno-sign-compare -Wno-undef -Wno-missing-declarations -Wno-uninitialized -Wno-switch -Wno-parentheses -Wno-array-bounds -Wno-extra -Wno-deprecated-declarations -Wno-misleading-indentation -Wno-deprecated -Wno-suggest-override -Wno-implicit-fallthrough -O3 -DNDEBUG  -DNDEBUG -fPIC   -o CMakeFiles/IlmImf.dir/Half/half.cpp.o -c /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp

In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,

                 from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,

                 from /usr/local/include/c++/7.3.0/string:52,

                 from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,

                 from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,

                 from /usr/local/include/c++/7.3.0/ios:42,

                 from /usr/local/include/c++/7.3.0/ostream:38,

                 from /usr/local/include/c++/7.3.0/iostream:39,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.h:88,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp:48:

/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory

 #include_next <stdlib.h>

               ^~~~~~~~~~

compilation terminated.

make[2]: *** [3rdparty/openexr/CMakeFiles/IlmImf.dir/build.make:63: 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o] Error 1

make[2]: Leaving directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'

make[1]: *** [CMakeFiles/Makefile2:442: 3rdparty/openexr/CMakeFiles/IlmImf.dir/all] Error 2

make[1]: Leaving directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'

make: *** [Makefile:163: all] Error 2

edited Nov 14 '18 at 2:57

asked Nov 13 '18 at 21:08

JAL

17.6k13759

It would be interesting to check make VERBOSE=1 output - it will show exact command line used for compilation. BTW, I understand why do you use sudo for make install, but why do you use sudo for make too?

– Tsyvarev
Nov 13 '18 at 22:04

@Tsyvarev thanks, I will include that output. I think I only used sudo for make install (there are two outputs there) and the initial one, the cmake command, was run without sudo.

– JAL
Nov 14 '18 at 2:54

output with VERBOSE=1 added. Based on my research, this has something to do with the -isystem in the command, but I don't know enough about c++ to fix it.

– JAL
Nov 14 '18 at 2:57

Yes, according to other cases with similar error message, -isystem plays a role in that. There is CMakeCache.txt file in the build directory, does it contain a string /usr/local/include?

– Tsyvarev
Nov 14 '18 at 7:25

@Tsyvarev yes, there are many occurrences of that path in CMakeCache.txt.

– JAL
Nov 14 '18 at 14:28

add a comment |

Configuration seems to run successfully...

cmake -D CMAKE_BUILD_TYPE=Release -D CMAKE_INSTALL_PREFIX=/usr/local ..

-- The CXX compiler identification is GNU 7.3.0



-- The C compiler identification is GNU 7.3.0

-- Check for working CXX compiler: /usr/local/bin/c++

-- Check for working CXX compiler: /usr/local/bin/c++ -- works

(etc)

then when I run make install,

chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo make install

Scanning dependencies of target gen-pkgconfig

[  0%] Generate opencv.pc

[  0%] Built target gen-pkgconfig

Scanning dependencies of target libjpeg-turbo

[  0%] Building C object 3rdparty/libjpeg-turbo/CMakeFiles/libjpeg-turbo.dir/src/jcapimin.c.o

[  0%] Building C object 3rdparty/libjpeg-turbo/CMakeFiles/libjpeg-turbo.dir/src/jcapistd.c.o`



(etc)



`[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_print.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_read.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_strip.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_swab.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_thunder.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_tile.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_version.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_warning.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_write.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_zip.c.o

[  5%] Building CXX object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_stream.cxx.o

In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,

                 from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,

                 from /usr/local/include/c++/7.3.0/string:52,

                 from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,

                 from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,

                 from /usr/local/include/c++/7.3.0/ios:42,

                 from /usr/local/include/c++/7.3.0/ostream:38,

                 from /usr/local/include/c++/7.3.0/iostream:39,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/libtiff/tiffio.hxx:34,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/libtiff/tif_stream.cxx:31:

/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory

 #include_next <stdlib.h>

               ^~~~~~~~~~

compilation terminated.

make[2]: *** [3rdparty/libtiff/CMakeFiles/libtiff.dir/build.make:557: 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_stream.cxx.o] Error 1

make[1]: *** [CMakeFiles/Makefile2:387: 3rdparty/libtiff/CMakeFiles/libtiff.dir/all] Error 2

make: *** [Makefile:163: all] Error 2

I have tried disabling 3rd party libraries and it fails later on, with the same error for a different component.

chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo make install

[  0%] Generate opencv.pc

[  0%] Built target gen-pkgconfig

[  9%] Built target libwebp

[ 11%] Built target libjasper

[ 13%] Built target libpng

[ 13%] Building CXX object 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o

In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,

                 from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,

                 from /usr/local/include/c++/7.3.0/string:52,

                 from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,

                 from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,

                 from /usr/local/include/c++/7.3.0/ios:42,

                 from /usr/local/include/c++/7.3.0/ostream:38,

                 from /usr/local/include/c++/7.3.0/iostream:39,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.h:88,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp:48:

/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory

 #include_next <stdlib.h>

               ^~~~~~~~~~

compilation terminated.

Versions and library appear fine...

chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ gcc --version

gcc (GCC) 7.3.0

Copyright (C) 2017 Free Software Foundation, Inc.

This is free software; see the source for copying conditions.  There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.



chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo find / -type f -name "*stdlib.h"

/usr/local/include/stdlib.h

/usr/local/include/bits/stdlib.h

/usr/local/include/c++/7.3.0/stdlib.h

/usr/local/include/c++/7.3.0/tr1/stdlib.h

/mnt/stateful_partition/dev_image/include/stdlib.h

/mnt/stateful_partition/dev_image/include/bits/stdlib.h

/mnt/stateful_partition/dev_image/include/c++/7.3.0/stdlib.h

/mnt/stateful_partition/dev_image/include/c++/7.3.0/tr1/stdlib.h

with VERBOSE=1,

make -f 3rdparty/openexr/CMakeFiles/IlmImf.dir/build.make 3rdparty/openexr/CMakeFiles/IlmImf.dir/build

make[2]: Entering directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'

[ 12%] Building CXX object 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o

cd /home/chronos/user/Downloads/python/opencv-3.4.3/build/3rdparty/openexr && /usr/local/bin/c++   -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/IlmImf -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Imath -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/IlmThread -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Iex -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half -I/home/chronos/user/Downloads/python/opencv-3.4.3/build/3rdparty/openexr -I/home/chronos/user/Downloads/python/opencv-3.4.3/build -isystem /usr/local/include  -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security   -Winit-self -Wpointer-arith  -Wsign-promo  -Winit-self -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-comment  -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffunction-sections -fdata-sections  -msse -msse2 -msse3 -fvisibility=hidden -fvisibility-inlines-hidden -Wno-shadow -Wno-unused -Wno-sign-compare -Wno-undef -Wno-missing-declarations -Wno-uninitialized -Wno-switch -Wno-parentheses -Wno-array-bounds -Wno-extra -Wno-deprecated-declarations -Wno-misleading-indentation -Wno-deprecated -Wno-suggest-override -Wno-implicit-fallthrough -O3 -DNDEBUG  -DNDEBUG -fPIC   -o CMakeFiles/IlmImf.dir/Half/half.cpp.o -c /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp

In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,

                 from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,

                 from /usr/local/include/c++/7.3.0/string:52,

                 from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,

                 from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,

                 from /usr/local/include/c++/7.3.0/ios:42,

                 from /usr/local/include/c++/7.3.0/ostream:38,

                 from /usr/local/include/c++/7.3.0/iostream:39,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.h:88,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp:48:

/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory

 #include_next <stdlib.h>

               ^~~~~~~~~~

compilation terminated.

make[2]: *** [3rdparty/openexr/CMakeFiles/IlmImf.dir/build.make:63: 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o] Error 1

make[2]: Leaving directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'

make[1]: *** [CMakeFiles/Makefile2:442: 3rdparty/openexr/CMakeFiles/IlmImf.dir/all] Error 2

make[1]: Leaving directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'

make: *** [Makefile:163: all] Error 2

edited Nov 14 '18 at 2:57

asked Nov 13 '18 at 21:08

JAL

17.6k13759

Configuration seems to run successfully...

cmake -D CMAKE_BUILD_TYPE=Release -D CMAKE_INSTALL_PREFIX=/usr/local ..

-- The CXX compiler identification is GNU 7.3.0



-- The C compiler identification is GNU 7.3.0

-- Check for working CXX compiler: /usr/local/bin/c++

-- Check for working CXX compiler: /usr/local/bin/c++ -- works

(etc)

then when I run make install,

chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo make install

Scanning dependencies of target gen-pkgconfig

[  0%] Generate opencv.pc

[  0%] Built target gen-pkgconfig

Scanning dependencies of target libjpeg-turbo

[  0%] Building C object 3rdparty/libjpeg-turbo/CMakeFiles/libjpeg-turbo.dir/src/jcapimin.c.o

[  0%] Building C object 3rdparty/libjpeg-turbo/CMakeFiles/libjpeg-turbo.dir/src/jcapistd.c.o`



(etc)



`[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_print.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_read.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_strip.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_swab.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_thunder.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_tile.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_version.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_warning.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_write.c.o

[  5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_zip.c.o

[  5%] Building CXX object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_stream.cxx.o

In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,

                 from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,

                 from /usr/local/include/c++/7.3.0/string:52,

                 from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,

                 from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,

                 from /usr/local/include/c++/7.3.0/ios:42,

                 from /usr/local/include/c++/7.3.0/ostream:38,

                 from /usr/local/include/c++/7.3.0/iostream:39,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/libtiff/tiffio.hxx:34,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/libtiff/tif_stream.cxx:31:

/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory

 #include_next <stdlib.h>

               ^~~~~~~~~~

compilation terminated.

make[2]: *** [3rdparty/libtiff/CMakeFiles/libtiff.dir/build.make:557: 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_stream.cxx.o] Error 1

make[1]: *** [CMakeFiles/Makefile2:387: 3rdparty/libtiff/CMakeFiles/libtiff.dir/all] Error 2

make: *** [Makefile:163: all] Error 2

I have tried disabling 3rd party libraries and it fails later on, with the same error for a different component.

chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo make install

[  0%] Generate opencv.pc

[  0%] Built target gen-pkgconfig

[  9%] Built target libwebp

[ 11%] Built target libjasper

[ 13%] Built target libpng

[ 13%] Building CXX object 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o

In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,

                 from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,

                 from /usr/local/include/c++/7.3.0/string:52,

                 from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,

                 from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,

                 from /usr/local/include/c++/7.3.0/ios:42,

                 from /usr/local/include/c++/7.3.0/ostream:38,

                 from /usr/local/include/c++/7.3.0/iostream:39,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.h:88,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp:48:

/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory

 #include_next <stdlib.h>

               ^~~~~~~~~~

compilation terminated.

Versions and library appear fine...

chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ gcc --version

gcc (GCC) 7.3.0

Copyright (C) 2017 Free Software Foundation, Inc.

This is free software; see the source for copying conditions.  There is NO

warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.



chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo find / -type f -name "*stdlib.h"

/usr/local/include/stdlib.h

/usr/local/include/bits/stdlib.h

/usr/local/include/c++/7.3.0/stdlib.h

/usr/local/include/c++/7.3.0/tr1/stdlib.h

/mnt/stateful_partition/dev_image/include/stdlib.h

/mnt/stateful_partition/dev_image/include/bits/stdlib.h

/mnt/stateful_partition/dev_image/include/c++/7.3.0/stdlib.h

/mnt/stateful_partition/dev_image/include/c++/7.3.0/tr1/stdlib.h

with VERBOSE=1,

make -f 3rdparty/openexr/CMakeFiles/IlmImf.dir/build.make 3rdparty/openexr/CMakeFiles/IlmImf.dir/build

make[2]: Entering directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'

[ 12%] Building CXX object 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o

cd /home/chronos/user/Downloads/python/opencv-3.4.3/build/3rdparty/openexr && /usr/local/bin/c++   -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/IlmImf -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Imath -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/IlmThread -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Iex -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half -I/home/chronos/user/Downloads/python/opencv-3.4.3/build/3rdparty/openexr -I/home/chronos/user/Downloads/python/opencv-3.4.3/build -isystem /usr/local/include  -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security   -Winit-self -Wpointer-arith  -Wsign-promo  -Winit-self -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-comment  -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffunction-sections -fdata-sections  -msse -msse2 -msse3 -fvisibility=hidden -fvisibility-inlines-hidden -Wno-shadow -Wno-unused -Wno-sign-compare -Wno-undef -Wno-missing-declarations -Wno-uninitialized -Wno-switch -Wno-parentheses -Wno-array-bounds -Wno-extra -Wno-deprecated-declarations -Wno-misleading-indentation -Wno-deprecated -Wno-suggest-override -Wno-implicit-fallthrough -O3 -DNDEBUG  -DNDEBUG -fPIC   -o CMakeFiles/IlmImf.dir/Half/half.cpp.o -c /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp

In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,

                 from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,

                 from /usr/local/include/c++/7.3.0/string:52,

                 from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,

                 from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,

                 from /usr/local/include/c++/7.3.0/ios:42,

                 from /usr/local/include/c++/7.3.0/ostream:38,

                 from /usr/local/include/c++/7.3.0/iostream:39,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.h:88,

                 from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp:48:

/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory

 #include_next <stdlib.h>

               ^~~~~~~~~~

compilation terminated.

make[2]: *** [3rdparty/openexr/CMakeFiles/IlmImf.dir/build.make:63: 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o] Error 1

make[2]: Leaving directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'

make[1]: *** [CMakeFiles/Makefile2:442: 3rdparty/openexr/CMakeFiles/IlmImf.dir/all] Error 2

make[1]: Leaving directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'

make: *** [Makefile:163: all] Error 2

c++ opencv cmake configure google-chrome-os

edited Nov 14 '18 at 2:57

asked Nov 13 '18 at 21:08

JAL

17.6k13759

edited Nov 14 '18 at 2:57

asked Nov 13 '18 at 21:08

JAL

17.6k13759

edited Nov 14 '18 at 2:57

asked Nov 13 '18 at 21:08

JAL

17.6k13759

asked Nov 13 '18 at 21:08

JAL

17.6k13759

asked Nov 13 '18 at 21:08

JAL

17.6k13759

It would be interesting to check make VERBOSE=1 output - it will show exact command line used for compilation. BTW, I understand why do you use sudo for make install, but why do you use sudo for make too?

– Tsyvarev
Nov 13 '18 at 22:04

@Tsyvarev thanks, I will include that output. I think I only used sudo for make install (there are two outputs there) and the initial one, the cmake command, was run without sudo.

– JAL
Nov 14 '18 at 2:54

output with VERBOSE=1 added. Based on my research, this has something to do with the -isystem in the command, but I don't know enough about c++ to fix it.

– JAL
Nov 14 '18 at 2:57

Yes, according to other cases with similar error message, -isystem plays a role in that. There is CMakeCache.txt file in the build directory, does it contain a string /usr/local/include?

– Tsyvarev
Nov 14 '18 at 7:25

@Tsyvarev yes, there are many occurrences of that path in CMakeCache.txt.

– JAL
Nov 14 '18 at 14:28

add a comment |

It would be interesting to check make VERBOSE=1 output - it will show exact command line used for compilation. BTW, I understand why do you use sudo for make install, but why do you use sudo for make too?

– Tsyvarev
Nov 13 '18 at 22:04

@Tsyvarev thanks, I will include that output. I think I only used sudo for make install (there are two outputs there) and the initial one, the cmake command, was run without sudo.

– JAL
Nov 14 '18 at 2:54

output with VERBOSE=1 added. Based on my research, this has something to do with the -isystem in the command, but I don't know enough about c++ to fix it.

– JAL
Nov 14 '18 at 2:57

Yes, according to other cases with similar error message, -isystem plays a role in that. There is CMakeCache.txt file in the build directory, does it contain a string /usr/local/include?

– Tsyvarev
Nov 14 '18 at 7:25

@Tsyvarev yes, there are many occurrences of that path in CMakeCache.txt.

– JAL
Nov 14 '18 at 14:28

It would be interesting to check make VERBOSE=1 output - it will show exact command line used for compilation. BTW, I understand why do you use sudo for make install, but why do you use sudo for make too?

– Tsyvarev
Nov 13 '18 at 22:04

@Tsyvarev thanks, I will include that output. I think I only used sudo for make install (there are two outputs there) and the initial one, the cmake command, was run without sudo.

– JAL
Nov 14 '18 at 2:54

output with VERBOSE=1 added. Based on my research, this has something to do with the -isystem in the command, but I don't know enough about c++ to fix it.

– JAL
Nov 14 '18 at 2:57

Yes, according to other cases with similar error message, -isystem plays a role in that. There is CMakeCache.txt file in the build directory, does it contain a string /usr/local/include?

– Tsyvarev
Nov 14 '18 at 7:25

@Tsyvarev yes, there are many occurrences of that path in CMakeCache.txt.

– JAL
Nov 14 '18 at 14:28

add a comment |

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