error linking stdlib.h when building OpenCV on a Chromebook












0















Configuration seems to run successfully...



cmake -D CMAKE_BUILD_TYPE=Release -D CMAKE_INSTALL_PREFIX=/usr/local ..
-- The CXX compiler identification is GNU 7.3.0

-- The C compiler identification is GNU 7.3.0
-- Check for working CXX compiler: /usr/local/bin/c++
-- Check for working CXX compiler: /usr/local/bin/c++ -- works


(etc)



then when I run make install,



chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo make install
Scanning dependencies of target gen-pkgconfig
[ 0%] Generate opencv.pc
[ 0%] Built target gen-pkgconfig
Scanning dependencies of target libjpeg-turbo
[ 0%] Building C object 3rdparty/libjpeg-turbo/CMakeFiles/libjpeg-turbo.dir/src/jcapimin.c.o
[ 0%] Building C object 3rdparty/libjpeg-turbo/CMakeFiles/libjpeg-turbo.dir/src/jcapistd.c.o`

(etc)

`[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_print.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_read.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_strip.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_swab.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_thunder.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_tile.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_version.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_warning.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_write.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_zip.c.o
[ 5%] Building CXX object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_stream.cxx.o
In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,
from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,
from /usr/local/include/c++/7.3.0/string:52,
from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,
from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,
from /usr/local/include/c++/7.3.0/ios:42,
from /usr/local/include/c++/7.3.0/ostream:38,
from /usr/local/include/c++/7.3.0/iostream:39,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/libtiff/tiffio.hxx:34,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/libtiff/tif_stream.cxx:31:
/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory
#include_next <stdlib.h>
^~~~~~~~~~
compilation terminated.
make[2]: *** [3rdparty/libtiff/CMakeFiles/libtiff.dir/build.make:557: 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_stream.cxx.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:387: 3rdparty/libtiff/CMakeFiles/libtiff.dir/all] Error 2
make: *** [Makefile:163: all] Error 2


I have tried disabling 3rd party libraries and it fails later on, with the same error for a different component.



chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo make install
[ 0%] Generate opencv.pc
[ 0%] Built target gen-pkgconfig
[ 9%] Built target libwebp
[ 11%] Built target libjasper
[ 13%] Built target libpng
[ 13%] Building CXX object 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o
In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,
from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,
from /usr/local/include/c++/7.3.0/string:52,
from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,
from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,
from /usr/local/include/c++/7.3.0/ios:42,
from /usr/local/include/c++/7.3.0/ostream:38,
from /usr/local/include/c++/7.3.0/iostream:39,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.h:88,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp:48:
/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory
#include_next <stdlib.h>
^~~~~~~~~~
compilation terminated.


Versions and library appear fine...



chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ gcc --version
gcc (GCC) 7.3.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo find / -type f -name "*stdlib.h"
/usr/local/include/stdlib.h
/usr/local/include/bits/stdlib.h
/usr/local/include/c++/7.3.0/stdlib.h
/usr/local/include/c++/7.3.0/tr1/stdlib.h
/mnt/stateful_partition/dev_image/include/stdlib.h
/mnt/stateful_partition/dev_image/include/bits/stdlib.h
/mnt/stateful_partition/dev_image/include/c++/7.3.0/stdlib.h
/mnt/stateful_partition/dev_image/include/c++/7.3.0/tr1/stdlib.h


with VERBOSE=1,



make -f 3rdparty/openexr/CMakeFiles/IlmImf.dir/build.make 3rdparty/openexr/CMakeFiles/IlmImf.dir/build
make[2]: Entering directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'
[ 12%] Building CXX object 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o
cd /home/chronos/user/Downloads/python/opencv-3.4.3/build/3rdparty/openexr && /usr/local/bin/c++ -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/IlmImf -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Imath -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/IlmThread -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Iex -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half -I/home/chronos/user/Downloads/python/opencv-3.4.3/build/3rdparty/openexr -I/home/chronos/user/Downloads/python/opencv-3.4.3/build -isystem /usr/local/include -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Winit-self -Wpointer-arith -Wsign-promo -Winit-self -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-comment -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffunction-sections -fdata-sections -msse -msse2 -msse3 -fvisibility=hidden -fvisibility-inlines-hidden -Wno-shadow -Wno-unused -Wno-sign-compare -Wno-undef -Wno-missing-declarations -Wno-uninitialized -Wno-switch -Wno-parentheses -Wno-array-bounds -Wno-extra -Wno-deprecated-declarations -Wno-misleading-indentation -Wno-deprecated -Wno-suggest-override -Wno-implicit-fallthrough -O3 -DNDEBUG -DNDEBUG -fPIC -o CMakeFiles/IlmImf.dir/Half/half.cpp.o -c /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp
In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,
from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,
from /usr/local/include/c++/7.3.0/string:52,
from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,
from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,
from /usr/local/include/c++/7.3.0/ios:42,
from /usr/local/include/c++/7.3.0/ostream:38,
from /usr/local/include/c++/7.3.0/iostream:39,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.h:88,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp:48:
/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory
#include_next <stdlib.h>
^~~~~~~~~~
compilation terminated.
make[2]: *** [3rdparty/openexr/CMakeFiles/IlmImf.dir/build.make:63: 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o] Error 1
make[2]: Leaving directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'
make[1]: *** [CMakeFiles/Makefile2:442: 3rdparty/openexr/CMakeFiles/IlmImf.dir/all] Error 2
make[1]: Leaving directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'
make: *** [Makefile:163: all] Error 2









share|improve this question

























  • It would be interesting to check make VERBOSE=1 output - it will show exact command line used for compilation. BTW, I understand why do you use sudo for make install, but why do you use sudo for make too?

    – Tsyvarev
    Nov 13 '18 at 22:04











  • @Tsyvarev thanks, I will include that output. I think I only used sudo for make install (there are two outputs there) and the initial one, the cmake command, was run without sudo.

    – JAL
    Nov 14 '18 at 2:54











  • output with VERBOSE=1 added. Based on my research, this has something to do with the -isystem in the command, but I don't know enough about c++ to fix it.

    – JAL
    Nov 14 '18 at 2:57











  • Yes, according to other cases with similar error message, -isystem plays a role in that. There is CMakeCache.txt file in the build directory, does it contain a string /usr/local/include?

    – Tsyvarev
    Nov 14 '18 at 7:25











  • @Tsyvarev yes, there are many occurrences of that path in CMakeCache.txt.

    – JAL
    Nov 14 '18 at 14:28
















0















Configuration seems to run successfully...



cmake -D CMAKE_BUILD_TYPE=Release -D CMAKE_INSTALL_PREFIX=/usr/local ..
-- The CXX compiler identification is GNU 7.3.0

-- The C compiler identification is GNU 7.3.0
-- Check for working CXX compiler: /usr/local/bin/c++
-- Check for working CXX compiler: /usr/local/bin/c++ -- works


(etc)



then when I run make install,



chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo make install
Scanning dependencies of target gen-pkgconfig
[ 0%] Generate opencv.pc
[ 0%] Built target gen-pkgconfig
Scanning dependencies of target libjpeg-turbo
[ 0%] Building C object 3rdparty/libjpeg-turbo/CMakeFiles/libjpeg-turbo.dir/src/jcapimin.c.o
[ 0%] Building C object 3rdparty/libjpeg-turbo/CMakeFiles/libjpeg-turbo.dir/src/jcapistd.c.o`

(etc)

`[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_print.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_read.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_strip.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_swab.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_thunder.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_tile.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_version.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_warning.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_write.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_zip.c.o
[ 5%] Building CXX object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_stream.cxx.o
In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,
from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,
from /usr/local/include/c++/7.3.0/string:52,
from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,
from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,
from /usr/local/include/c++/7.3.0/ios:42,
from /usr/local/include/c++/7.3.0/ostream:38,
from /usr/local/include/c++/7.3.0/iostream:39,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/libtiff/tiffio.hxx:34,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/libtiff/tif_stream.cxx:31:
/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory
#include_next <stdlib.h>
^~~~~~~~~~
compilation terminated.
make[2]: *** [3rdparty/libtiff/CMakeFiles/libtiff.dir/build.make:557: 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_stream.cxx.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:387: 3rdparty/libtiff/CMakeFiles/libtiff.dir/all] Error 2
make: *** [Makefile:163: all] Error 2


I have tried disabling 3rd party libraries and it fails later on, with the same error for a different component.



chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo make install
[ 0%] Generate opencv.pc
[ 0%] Built target gen-pkgconfig
[ 9%] Built target libwebp
[ 11%] Built target libjasper
[ 13%] Built target libpng
[ 13%] Building CXX object 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o
In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,
from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,
from /usr/local/include/c++/7.3.0/string:52,
from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,
from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,
from /usr/local/include/c++/7.3.0/ios:42,
from /usr/local/include/c++/7.3.0/ostream:38,
from /usr/local/include/c++/7.3.0/iostream:39,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.h:88,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp:48:
/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory
#include_next <stdlib.h>
^~~~~~~~~~
compilation terminated.


Versions and library appear fine...



chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ gcc --version
gcc (GCC) 7.3.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo find / -type f -name "*stdlib.h"
/usr/local/include/stdlib.h
/usr/local/include/bits/stdlib.h
/usr/local/include/c++/7.3.0/stdlib.h
/usr/local/include/c++/7.3.0/tr1/stdlib.h
/mnt/stateful_partition/dev_image/include/stdlib.h
/mnt/stateful_partition/dev_image/include/bits/stdlib.h
/mnt/stateful_partition/dev_image/include/c++/7.3.0/stdlib.h
/mnt/stateful_partition/dev_image/include/c++/7.3.0/tr1/stdlib.h


with VERBOSE=1,



make -f 3rdparty/openexr/CMakeFiles/IlmImf.dir/build.make 3rdparty/openexr/CMakeFiles/IlmImf.dir/build
make[2]: Entering directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'
[ 12%] Building CXX object 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o
cd /home/chronos/user/Downloads/python/opencv-3.4.3/build/3rdparty/openexr && /usr/local/bin/c++ -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/IlmImf -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Imath -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/IlmThread -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Iex -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half -I/home/chronos/user/Downloads/python/opencv-3.4.3/build/3rdparty/openexr -I/home/chronos/user/Downloads/python/opencv-3.4.3/build -isystem /usr/local/include -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Winit-self -Wpointer-arith -Wsign-promo -Winit-self -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-comment -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffunction-sections -fdata-sections -msse -msse2 -msse3 -fvisibility=hidden -fvisibility-inlines-hidden -Wno-shadow -Wno-unused -Wno-sign-compare -Wno-undef -Wno-missing-declarations -Wno-uninitialized -Wno-switch -Wno-parentheses -Wno-array-bounds -Wno-extra -Wno-deprecated-declarations -Wno-misleading-indentation -Wno-deprecated -Wno-suggest-override -Wno-implicit-fallthrough -O3 -DNDEBUG -DNDEBUG -fPIC -o CMakeFiles/IlmImf.dir/Half/half.cpp.o -c /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp
In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,
from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,
from /usr/local/include/c++/7.3.0/string:52,
from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,
from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,
from /usr/local/include/c++/7.3.0/ios:42,
from /usr/local/include/c++/7.3.0/ostream:38,
from /usr/local/include/c++/7.3.0/iostream:39,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.h:88,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp:48:
/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory
#include_next <stdlib.h>
^~~~~~~~~~
compilation terminated.
make[2]: *** [3rdparty/openexr/CMakeFiles/IlmImf.dir/build.make:63: 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o] Error 1
make[2]: Leaving directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'
make[1]: *** [CMakeFiles/Makefile2:442: 3rdparty/openexr/CMakeFiles/IlmImf.dir/all] Error 2
make[1]: Leaving directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'
make: *** [Makefile:163: all] Error 2









share|improve this question

























  • It would be interesting to check make VERBOSE=1 output - it will show exact command line used for compilation. BTW, I understand why do you use sudo for make install, but why do you use sudo for make too?

    – Tsyvarev
    Nov 13 '18 at 22:04











  • @Tsyvarev thanks, I will include that output. I think I only used sudo for make install (there are two outputs there) and the initial one, the cmake command, was run without sudo.

    – JAL
    Nov 14 '18 at 2:54











  • output with VERBOSE=1 added. Based on my research, this has something to do with the -isystem in the command, but I don't know enough about c++ to fix it.

    – JAL
    Nov 14 '18 at 2:57











  • Yes, according to other cases with similar error message, -isystem plays a role in that. There is CMakeCache.txt file in the build directory, does it contain a string /usr/local/include?

    – Tsyvarev
    Nov 14 '18 at 7:25











  • @Tsyvarev yes, there are many occurrences of that path in CMakeCache.txt.

    – JAL
    Nov 14 '18 at 14:28














0












0








0








Configuration seems to run successfully...



cmake -D CMAKE_BUILD_TYPE=Release -D CMAKE_INSTALL_PREFIX=/usr/local ..
-- The CXX compiler identification is GNU 7.3.0

-- The C compiler identification is GNU 7.3.0
-- Check for working CXX compiler: /usr/local/bin/c++
-- Check for working CXX compiler: /usr/local/bin/c++ -- works


(etc)



then when I run make install,



chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo make install
Scanning dependencies of target gen-pkgconfig
[ 0%] Generate opencv.pc
[ 0%] Built target gen-pkgconfig
Scanning dependencies of target libjpeg-turbo
[ 0%] Building C object 3rdparty/libjpeg-turbo/CMakeFiles/libjpeg-turbo.dir/src/jcapimin.c.o
[ 0%] Building C object 3rdparty/libjpeg-turbo/CMakeFiles/libjpeg-turbo.dir/src/jcapistd.c.o`

(etc)

`[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_print.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_read.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_strip.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_swab.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_thunder.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_tile.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_version.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_warning.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_write.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_zip.c.o
[ 5%] Building CXX object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_stream.cxx.o
In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,
from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,
from /usr/local/include/c++/7.3.0/string:52,
from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,
from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,
from /usr/local/include/c++/7.3.0/ios:42,
from /usr/local/include/c++/7.3.0/ostream:38,
from /usr/local/include/c++/7.3.0/iostream:39,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/libtiff/tiffio.hxx:34,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/libtiff/tif_stream.cxx:31:
/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory
#include_next <stdlib.h>
^~~~~~~~~~
compilation terminated.
make[2]: *** [3rdparty/libtiff/CMakeFiles/libtiff.dir/build.make:557: 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_stream.cxx.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:387: 3rdparty/libtiff/CMakeFiles/libtiff.dir/all] Error 2
make: *** [Makefile:163: all] Error 2


I have tried disabling 3rd party libraries and it fails later on, with the same error for a different component.



chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo make install
[ 0%] Generate opencv.pc
[ 0%] Built target gen-pkgconfig
[ 9%] Built target libwebp
[ 11%] Built target libjasper
[ 13%] Built target libpng
[ 13%] Building CXX object 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o
In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,
from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,
from /usr/local/include/c++/7.3.0/string:52,
from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,
from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,
from /usr/local/include/c++/7.3.0/ios:42,
from /usr/local/include/c++/7.3.0/ostream:38,
from /usr/local/include/c++/7.3.0/iostream:39,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.h:88,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp:48:
/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory
#include_next <stdlib.h>
^~~~~~~~~~
compilation terminated.


Versions and library appear fine...



chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ gcc --version
gcc (GCC) 7.3.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo find / -type f -name "*stdlib.h"
/usr/local/include/stdlib.h
/usr/local/include/bits/stdlib.h
/usr/local/include/c++/7.3.0/stdlib.h
/usr/local/include/c++/7.3.0/tr1/stdlib.h
/mnt/stateful_partition/dev_image/include/stdlib.h
/mnt/stateful_partition/dev_image/include/bits/stdlib.h
/mnt/stateful_partition/dev_image/include/c++/7.3.0/stdlib.h
/mnt/stateful_partition/dev_image/include/c++/7.3.0/tr1/stdlib.h


with VERBOSE=1,



make -f 3rdparty/openexr/CMakeFiles/IlmImf.dir/build.make 3rdparty/openexr/CMakeFiles/IlmImf.dir/build
make[2]: Entering directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'
[ 12%] Building CXX object 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o
cd /home/chronos/user/Downloads/python/opencv-3.4.3/build/3rdparty/openexr && /usr/local/bin/c++ -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/IlmImf -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Imath -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/IlmThread -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Iex -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half -I/home/chronos/user/Downloads/python/opencv-3.4.3/build/3rdparty/openexr -I/home/chronos/user/Downloads/python/opencv-3.4.3/build -isystem /usr/local/include -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Winit-self -Wpointer-arith -Wsign-promo -Winit-self -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-comment -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffunction-sections -fdata-sections -msse -msse2 -msse3 -fvisibility=hidden -fvisibility-inlines-hidden -Wno-shadow -Wno-unused -Wno-sign-compare -Wno-undef -Wno-missing-declarations -Wno-uninitialized -Wno-switch -Wno-parentheses -Wno-array-bounds -Wno-extra -Wno-deprecated-declarations -Wno-misleading-indentation -Wno-deprecated -Wno-suggest-override -Wno-implicit-fallthrough -O3 -DNDEBUG -DNDEBUG -fPIC -o CMakeFiles/IlmImf.dir/Half/half.cpp.o -c /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp
In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,
from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,
from /usr/local/include/c++/7.3.0/string:52,
from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,
from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,
from /usr/local/include/c++/7.3.0/ios:42,
from /usr/local/include/c++/7.3.0/ostream:38,
from /usr/local/include/c++/7.3.0/iostream:39,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.h:88,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp:48:
/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory
#include_next <stdlib.h>
^~~~~~~~~~
compilation terminated.
make[2]: *** [3rdparty/openexr/CMakeFiles/IlmImf.dir/build.make:63: 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o] Error 1
make[2]: Leaving directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'
make[1]: *** [CMakeFiles/Makefile2:442: 3rdparty/openexr/CMakeFiles/IlmImf.dir/all] Error 2
make[1]: Leaving directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'
make: *** [Makefile:163: all] Error 2









share|improve this question
















Configuration seems to run successfully...



cmake -D CMAKE_BUILD_TYPE=Release -D CMAKE_INSTALL_PREFIX=/usr/local ..
-- The CXX compiler identification is GNU 7.3.0

-- The C compiler identification is GNU 7.3.0
-- Check for working CXX compiler: /usr/local/bin/c++
-- Check for working CXX compiler: /usr/local/bin/c++ -- works


(etc)



then when I run make install,



chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo make install
Scanning dependencies of target gen-pkgconfig
[ 0%] Generate opencv.pc
[ 0%] Built target gen-pkgconfig
Scanning dependencies of target libjpeg-turbo
[ 0%] Building C object 3rdparty/libjpeg-turbo/CMakeFiles/libjpeg-turbo.dir/src/jcapimin.c.o
[ 0%] Building C object 3rdparty/libjpeg-turbo/CMakeFiles/libjpeg-turbo.dir/src/jcapistd.c.o`

(etc)

`[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_print.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_read.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_strip.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_swab.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_thunder.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_tile.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_version.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_warning.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_write.c.o
[ 5%] Building C object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_zip.c.o
[ 5%] Building CXX object 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_stream.cxx.o
In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,
from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,
from /usr/local/include/c++/7.3.0/string:52,
from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,
from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,
from /usr/local/include/c++/7.3.0/ios:42,
from /usr/local/include/c++/7.3.0/ostream:38,
from /usr/local/include/c++/7.3.0/iostream:39,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/libtiff/tiffio.hxx:34,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/libtiff/tif_stream.cxx:31:
/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory
#include_next <stdlib.h>
^~~~~~~~~~
compilation terminated.
make[2]: *** [3rdparty/libtiff/CMakeFiles/libtiff.dir/build.make:557: 3rdparty/libtiff/CMakeFiles/libtiff.dir/tif_stream.cxx.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:387: 3rdparty/libtiff/CMakeFiles/libtiff.dir/all] Error 2
make: *** [Makefile:163: all] Error 2


I have tried disabling 3rd party libraries and it fails later on, with the same error for a different component.



chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo make install
[ 0%] Generate opencv.pc
[ 0%] Built target gen-pkgconfig
[ 9%] Built target libwebp
[ 11%] Built target libjasper
[ 13%] Built target libpng
[ 13%] Building CXX object 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o
In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,
from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,
from /usr/local/include/c++/7.3.0/string:52,
from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,
from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,
from /usr/local/include/c++/7.3.0/ios:42,
from /usr/local/include/c++/7.3.0/ostream:38,
from /usr/local/include/c++/7.3.0/iostream:39,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.h:88,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp:48:
/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory
#include_next <stdlib.h>
^~~~~~~~~~
compilation terminated.


Versions and library appear fine...



chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ gcc --version
gcc (GCC) 7.3.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

chronos@localhost ~/Downloads/python/opencv-3.4.3/build $ sudo find / -type f -name "*stdlib.h"
/usr/local/include/stdlib.h
/usr/local/include/bits/stdlib.h
/usr/local/include/c++/7.3.0/stdlib.h
/usr/local/include/c++/7.3.0/tr1/stdlib.h
/mnt/stateful_partition/dev_image/include/stdlib.h
/mnt/stateful_partition/dev_image/include/bits/stdlib.h
/mnt/stateful_partition/dev_image/include/c++/7.3.0/stdlib.h
/mnt/stateful_partition/dev_image/include/c++/7.3.0/tr1/stdlib.h


with VERBOSE=1,



make -f 3rdparty/openexr/CMakeFiles/IlmImf.dir/build.make 3rdparty/openexr/CMakeFiles/IlmImf.dir/build
make[2]: Entering directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'
[ 12%] Building CXX object 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o
cd /home/chronos/user/Downloads/python/opencv-3.4.3/build/3rdparty/openexr && /usr/local/bin/c++ -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/IlmImf -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Imath -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/IlmThread -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Iex -I/home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half -I/home/chronos/user/Downloads/python/opencv-3.4.3/build/3rdparty/openexr -I/home/chronos/user/Downloads/python/opencv-3.4.3/build -isystem /usr/local/include -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Winit-self -Wpointer-arith -Wsign-promo -Winit-self -Wno-narrowing -Wno-delete-non-virtual-dtor -Wno-comment -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffunction-sections -fdata-sections -msse -msse2 -msse3 -fvisibility=hidden -fvisibility-inlines-hidden -Wno-shadow -Wno-unused -Wno-sign-compare -Wno-undef -Wno-missing-declarations -Wno-uninitialized -Wno-switch -Wno-parentheses -Wno-array-bounds -Wno-extra -Wno-deprecated-declarations -Wno-misleading-indentation -Wno-deprecated -Wno-suggest-override -Wno-implicit-fallthrough -O3 -DNDEBUG -DNDEBUG -fPIC -o CMakeFiles/IlmImf.dir/Half/half.cpp.o -c /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp
In file included from /usr/local/include/c++/7.3.0/ext/string_conversions.h:41:0,
from /usr/local/include/c++/7.3.0/bits/basic_string.h:6349,
from /usr/local/include/c++/7.3.0/string:52,
from /usr/local/include/c++/7.3.0/bits/locale_classes.h:40,
from /usr/local/include/c++/7.3.0/bits/ios_base.h:41,
from /usr/local/include/c++/7.3.0/ios:42,
from /usr/local/include/c++/7.3.0/ostream:38,
from /usr/local/include/c++/7.3.0/iostream:39,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.h:88,
from /home/chronos/user/Downloads/python/opencv-3.4.3/3rdparty/openexr/Half/half.cpp:48:
/usr/local/include/c++/7.3.0/cstdlib:75:15: fatal error: stdlib.h: No such file or directory
#include_next <stdlib.h>
^~~~~~~~~~
compilation terminated.
make[2]: *** [3rdparty/openexr/CMakeFiles/IlmImf.dir/build.make:63: 3rdparty/openexr/CMakeFiles/IlmImf.dir/Half/half.cpp.o] Error 1
make[2]: Leaving directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'
make[1]: *** [CMakeFiles/Makefile2:442: 3rdparty/openexr/CMakeFiles/IlmImf.dir/all] Error 2
make[1]: Leaving directory '/home/chronos/user/Downloads/python/opencv-3.4.3/build'
make: *** [Makefile:163: all] Error 2






c++ opencv cmake configure google-chrome-os






share|improve this question















share|improve this question













share|improve this question




share|improve this question








edited Nov 14 '18 at 2:57







JAL

















asked Nov 13 '18 at 21:08









JALJAL

17.6k13759




17.6k13759













  • It would be interesting to check make VERBOSE=1 output - it will show exact command line used for compilation. BTW, I understand why do you use sudo for make install, but why do you use sudo for make too?

    – Tsyvarev
    Nov 13 '18 at 22:04











  • @Tsyvarev thanks, I will include that output. I think I only used sudo for make install (there are two outputs there) and the initial one, the cmake command, was run without sudo.

    – JAL
    Nov 14 '18 at 2:54











  • output with VERBOSE=1 added. Based on my research, this has something to do with the -isystem in the command, but I don't know enough about c++ to fix it.

    – JAL
    Nov 14 '18 at 2:57











  • Yes, according to other cases with similar error message, -isystem plays a role in that. There is CMakeCache.txt file in the build directory, does it contain a string /usr/local/include?

    – Tsyvarev
    Nov 14 '18 at 7:25











  • @Tsyvarev yes, there are many occurrences of that path in CMakeCache.txt.

    – JAL
    Nov 14 '18 at 14:28



















  • It would be interesting to check make VERBOSE=1 output - it will show exact command line used for compilation. BTW, I understand why do you use sudo for make install, but why do you use sudo for make too?

    – Tsyvarev
    Nov 13 '18 at 22:04











  • @Tsyvarev thanks, I will include that output. I think I only used sudo for make install (there are two outputs there) and the initial one, the cmake command, was run without sudo.

    – JAL
    Nov 14 '18 at 2:54











  • output with VERBOSE=1 added. Based on my research, this has something to do with the -isystem in the command, but I don't know enough about c++ to fix it.

    – JAL
    Nov 14 '18 at 2:57











  • Yes, according to other cases with similar error message, -isystem plays a role in that. There is CMakeCache.txt file in the build directory, does it contain a string /usr/local/include?

    – Tsyvarev
    Nov 14 '18 at 7:25











  • @Tsyvarev yes, there are many occurrences of that path in CMakeCache.txt.

    – JAL
    Nov 14 '18 at 14:28

















It would be interesting to check make VERBOSE=1 output - it will show exact command line used for compilation. BTW, I understand why do you use sudo for make install, but why do you use sudo for make too?

– Tsyvarev
Nov 13 '18 at 22:04





It would be interesting to check make VERBOSE=1 output - it will show exact command line used for compilation. BTW, I understand why do you use sudo for make install, but why do you use sudo for make too?

– Tsyvarev
Nov 13 '18 at 22:04













@Tsyvarev thanks, I will include that output. I think I only used sudo for make install (there are two outputs there) and the initial one, the cmake command, was run without sudo.

– JAL
Nov 14 '18 at 2:54





@Tsyvarev thanks, I will include that output. I think I only used sudo for make install (there are two outputs there) and the initial one, the cmake command, was run without sudo.

– JAL
Nov 14 '18 at 2:54













output with VERBOSE=1 added. Based on my research, this has something to do with the -isystem in the command, but I don't know enough about c++ to fix it.

– JAL
Nov 14 '18 at 2:57





output with VERBOSE=1 added. Based on my research, this has something to do with the -isystem in the command, but I don't know enough about c++ to fix it.

– JAL
Nov 14 '18 at 2:57













Yes, according to other cases with similar error message, -isystem plays a role in that. There is CMakeCache.txt file in the build directory, does it contain a string /usr/local/include?

– Tsyvarev
Nov 14 '18 at 7:25





Yes, according to other cases with similar error message, -isystem plays a role in that. There is CMakeCache.txt file in the build directory, does it contain a string /usr/local/include?

– Tsyvarev
Nov 14 '18 at 7:25













@Tsyvarev yes, there are many occurrences of that path in CMakeCache.txt.

– JAL
Nov 14 '18 at 14:28





@Tsyvarev yes, there are many occurrences of that path in CMakeCache.txt.

– JAL
Nov 14 '18 at 14:28












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