ggpubr not creating multiple bars in ggdotchart
Utilizing the example package code in ggpubr, the ggdotchart function does not create separate segments as is shown in the example, instead there is only a single segment, though the dots seem to be placed in the correct orientation. Does anyone have any tips on what the problem may be? I've thought it may be due to factors, tibbles vs. df, but I haven't been able to determine the problem.
Code:
df <- diamonds %>%
filter(color %in% c("J", "D")) %>%
group_by(cut, color) %>%
summarise(counts = n())
ggdotchart(df, x = "cut", y ="counts",
color = "color", palette = "jco", size = 3,
add = "segment",
add.params = list(color = "lightgray", size = 1.5),
position = position_dodge(0.3),
ggtheme = theme_pubclean()
)
With the expected output of:
But instead I am getting:
r ggplot2 ggpubr
edited Nov 15 '18 at 21:57
markus
11.1k1031
asked Nov 14 '18 at 20:49
JenksJenks
3551521
add a comment |
Utilizing the example package code in ggpubr, the ggdotchart function does not create separate segments as is shown in the example, instead there is only a single segment, though the dots seem to be placed in the correct orientation. Does anyone have any tips on what the problem may be? I've thought it may be due to factors, tibbles vs. df, but I haven't been able to determine the problem.
Code:
df <- diamonds %>%
filter(color %in% c("J", "D")) %>%
group_by(cut, color) %>%
summarise(counts = n())
ggdotchart(df, x = "cut", y ="counts",
color = "color", palette = "jco", size = 3,
add = "segment",
add.params = list(color = "lightgray", size = 1.5),
position = position_dodge(0.3),
ggtheme = theme_pubclean()
)
With the expected output of:
But instead I am getting:
r ggplot2 ggpubr
edited Nov 15 '18 at 21:57
markus
11.1k1031
asked Nov 14 '18 at 20:49
JenksJenks
3551521
add a comment |
Utilizing the example package code in ggpubr, the ggdotchart function does not create separate segments as is shown in the example, instead there is only a single segment, though the dots seem to be placed in the correct orientation. Does anyone have any tips on what the problem may be? I've thought it may be due to factors, tibbles vs. df, but I haven't been able to determine the problem.
Code:
df <- diamonds %>%
filter(color %in% c("J", "D")) %>%
group_by(cut, color) %>%
summarise(counts = n())
ggdotchart(df, x = "cut", y ="counts",
color = "color", palette = "jco", size = 3,
add = "segment",
add.params = list(color = "lightgray", size = 1.5),
position = position_dodge(0.3),
ggtheme = theme_pubclean()
)
With the expected output of:
But instead I am getting:
r ggplot2 ggpubr
edited Nov 15 '18 at 21:57
markus
11.1k1031
asked Nov 14 '18 at 20:49
JenksJenks
3551521
Utilizing the example package code in ggpubr, the ggdotchart function does not create separate segments as is shown in the example, instead there is only a single segment, though the dots seem to be placed in the correct orientation. Does anyone have any tips on what the problem may be? I've thought it may be due to factors, tibbles vs. df, but I haven't been able to determine the problem.
Code:
df <- diamonds %>%
filter(color %in% c("J", "D")) %>%
group_by(cut, color) %>%
summarise(counts = n())
ggdotchart(df, x = "cut", y ="counts",
color = "color", palette = "jco", size = 3,
add = "segment",
add.params = list(color = "lightgray", size = 1.5),
position = position_dodge(0.3),
ggtheme = theme_pubclean()
)
With the expected output of:
But instead I am getting:
r ggplot2 ggpubr
r ggplot2 ggpubr
edited Nov 15 '18 at 21:57
markus
11.1k1031
asked Nov 14 '18 at 20:49
JenksJenks
3551521
edited Nov 15 '18 at 21:57
markus
11.1k1031
asked Nov 14 '18 at 20:49
JenksJenks
3551521
edited Nov 15 '18 at 21:57
markus
11.1k1031
edited Nov 15 '18 at 21:57
markus
11.1k1031
edited Nov 15 '18 at 21:57
markus
11.1k1031
11.1k1031
asked Nov 14 '18 at 20:49
JenksJenks
3551521
asked Nov 14 '18 at 20:49
JenksJenks
3551521
asked Nov 14 '18 at 20:49
JenksJenks
3551521
3551521
add a comment |
add a comment |
1 Answer
1
active
oldest
votes
Here is a way to get your desired plot without ggpubr::ggdotchart. The issue seems to be that geom_segment does not allow dodging, as discussed here: R - ggplot dodging geom_lines and here: how to jitter/dodge geom_segments so they remain parallel?.
# your data
df <- diamonds %>%
filter(color %in% c("J", "D")) %>%
group_by(cut, color) %>%
summarise(counts = n())
The first step is to expand your data. We will need this when we call geom_line which allows for dodging. I took this idea from @Stibu's answer. We create a copy of df and change the counts column to be 0 in df2. Finally we use bind_rows to create a single data frame from df and df2.
df2 <- df
df2$counts <- 0
df_out <- purrr::bind_rows(df, df2)
df_out
Then I use ggplot to create / replicate your desired output.
ggplot(df_out, aes(x = cut, y = counts)) +
geom_line(
aes(col = color), # needed for dodging, we'll later change colors to "lightgrey"
position = position_dodge(width = 0.3),
show.legend = FALSE,
size = 1.5
) +
geom_point(
aes(fill = color),
data = subset(df_out, counts > 0),
col = "transparent",
shape = 21,
size = 3,
position = position_dodge(width = 0.3)
) +
scale_color_manual(values = c("lightgray", "lightgray")) + #change line colors
ggpubr::fill_palette(palette = "jco") +
ggpubr::theme_pubclean()
answered Nov 14 '18 at 21:59
markusmarkus
11.1k1031
1
I didn't know thatgeom_segmentsdidn't allow for dodging, now it all makes sense! Thanks @markus
– Jenks
Nov 15 '18 at 14:34
add a comment |
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1 Answer
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active
oldest
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1 Answer
1
active
oldest
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active
oldest
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active
oldest
votes
Here is a way to get your desired plot without ggpubr::ggdotchart. The issue seems to be that geom_segment does not allow dodging, as discussed here: R - ggplot dodging geom_lines and here: how to jitter/dodge geom_segments so they remain parallel?.
# your data
df <- diamonds %>%
filter(color %in% c("J", "D")) %>%
group_by(cut, color) %>%
summarise(counts = n())
The first step is to expand your data. We will need this when we call geom_line which allows for dodging. I took this idea from @Stibu's answer. We create a copy of df and change the counts column to be 0 in df2. Finally we use bind_rows to create a single data frame from df and df2.
df2 <- df
df2$counts <- 0
df_out <- purrr::bind_rows(df, df2)
df_out
Then I use ggplot to create / replicate your desired output.
ggplot(df_out, aes(x = cut, y = counts)) +
geom_line(
aes(col = color), # needed for dodging, we'll later change colors to "lightgrey"
position = position_dodge(width = 0.3),
show.legend = FALSE,
size = 1.5
) +
geom_point(
aes(fill = color),
data = subset(df_out, counts > 0),
col = "transparent",
shape = 21,
size = 3,
position = position_dodge(width = 0.3)
) +
scale_color_manual(values = c("lightgray", "lightgray")) + #change line colors
ggpubr::fill_palette(palette = "jco") +
ggpubr::theme_pubclean()
answered Nov 14 '18 at 21:59
markusmarkus
11.1k1031
1
I didn't know thatgeom_segmentsdidn't allow for dodging, now it all makes sense! Thanks @markus
– Jenks
Nov 15 '18 at 14:34
add a comment |
Here is a way to get your desired plot without ggpubr::ggdotchart. The issue seems to be that geom_segment does not allow dodging, as discussed here: R - ggplot dodging geom_lines and here: how to jitter/dodge geom_segments so they remain parallel?.
# your data
df <- diamonds %>%
filter(color %in% c("J", "D")) %>%
group_by(cut, color) %>%
summarise(counts = n())
The first step is to expand your data. We will need this when we call geom_line which allows for dodging. I took this idea from @Stibu's answer. We create a copy of df and change the counts column to be 0 in df2. Finally we use bind_rows to create a single data frame from df and df2.
df2 <- df
df2$counts <- 0
df_out <- purrr::bind_rows(df, df2)
df_out
Then I use ggplot to create / replicate your desired output.
ggplot(df_out, aes(x = cut, y = counts)) +
geom_line(
aes(col = color), # needed for dodging, we'll later change colors to "lightgrey"
position = position_dodge(width = 0.3),
show.legend = FALSE,
size = 1.5
) +
geom_point(
aes(fill = color),
data = subset(df_out, counts > 0),
col = "transparent",
shape = 21,
size = 3,
position = position_dodge(width = 0.3)
) +
scale_color_manual(values = c("lightgray", "lightgray")) + #change line colors
ggpubr::fill_palette(palette = "jco") +
ggpubr::theme_pubclean()
answered Nov 14 '18 at 21:59
markusmarkus
11.1k1031
1
I didn't know thatgeom_segmentsdidn't allow for dodging, now it all makes sense! Thanks @markus
– Jenks
Nov 15 '18 at 14:34
add a comment |
Here is a way to get your desired plot without ggpubr::ggdotchart. The issue seems to be that geom_segment does not allow dodging, as discussed here: R - ggplot dodging geom_lines and here: how to jitter/dodge geom_segments so they remain parallel?.
# your data
df <- diamonds %>%
filter(color %in% c("J", "D")) %>%
group_by(cut, color) %>%
summarise(counts = n())
The first step is to expand your data. We will need this when we call geom_line which allows for dodging. I took this idea from @Stibu's answer. We create a copy of df and change the counts column to be 0 in df2. Finally we use bind_rows to create a single data frame from df and df2.
df2 <- df
df2$counts <- 0
df_out <- purrr::bind_rows(df, df2)
df_out
Then I use ggplot to create / replicate your desired output.
ggplot(df_out, aes(x = cut, y = counts)) +
geom_line(
aes(col = color), # needed for dodging, we'll later change colors to "lightgrey"
position = position_dodge(width = 0.3),
show.legend = FALSE,
size = 1.5
) +
geom_point(
aes(fill = color),
data = subset(df_out, counts > 0),
col = "transparent",
shape = 21,
size = 3,
position = position_dodge(width = 0.3)
) +
scale_color_manual(values = c("lightgray", "lightgray")) + #change line colors
ggpubr::fill_palette(palette = "jco") +
ggpubr::theme_pubclean()
answered Nov 14 '18 at 21:59
markusmarkus
11.1k1031
Here is a way to get your desired plot without ggpubr::ggdotchart. The issue seems to be that geom_segment does not allow dodging, as discussed here: R - ggplot dodging geom_lines and here: how to jitter/dodge geom_segments so they remain parallel?.
# your data
df <- diamonds %>%
filter(color %in% c("J", "D")) %>%
group_by(cut, color) %>%
summarise(counts = n())
The first step is to expand your data. We will need this when we call geom_line which allows for dodging. I took this idea from @Stibu's answer. We create a copy of df and change the counts column to be 0 in df2. Finally we use bind_rows to create a single data frame from df and df2.
df2 <- df
df2$counts <- 0
df_out <- purrr::bind_rows(df, df2)
df_out
Then I use ggplot to create / replicate your desired output.
ggplot(df_out, aes(x = cut, y = counts)) +
geom_line(
aes(col = color), # needed for dodging, we'll later change colors to "lightgrey"
position = position_dodge(width = 0.3),
show.legend = FALSE,
size = 1.5
) +
geom_point(
aes(fill = color),
data = subset(df_out, counts > 0),
col = "transparent",
shape = 21,
size = 3,
position = position_dodge(width = 0.3)
) +
scale_color_manual(values = c("lightgray", "lightgray")) + #change line colors
ggpubr::fill_palette(palette = "jco") +
ggpubr::theme_pubclean()
answered Nov 14 '18 at 21:59
markusmarkus
11.1k1031
edited Nov 15 '18 at 12:52
answered Nov 14 '18 at 21:59
markusmarkus
11.1k1031
answered Nov 14 '18 at 21:59
markusmarkus
11.1k1031
answered Nov 14 '18 at 21:59
markusmarkus
11.1k1031
11.1k1031
1
I didn't know thatgeom_segmentsdidn't allow for dodging, now it all makes sense! Thanks @markus
– Jenks
Nov 15 '18 at 14:34
add a comment |
1
I didn't know thatgeom_segmentsdidn't allow for dodging, now it all makes sense! Thanks @markus
– Jenks
Nov 15 '18 at 14:34
1
1
I didn't know that
geom_segments didn't allow for dodging, now it all makes sense! Thanks @markus– Jenks
Nov 15 '18 at 14:34
I didn't know that
geom_segments didn't allow for dodging, now it all makes sense! Thanks @markus– Jenks
Nov 15 '18 at 14:34
add a comment |
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