Session graph empty - multiple graphs





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I am trying to use a Policy Network and CNN within the same Python file. I am only training the PN and using the CNN as a feed-forward feature extractor. I am getting an issue where the Train-PC isn't "building" the imported Keras graph into the session, and thus when I try to run a feed-forward function on the CNN (feature_vector = self.extract_feature_vector([X_img_norm])[0]), I get the error posted below.



The only difference between the files on the Home-PC I am developing on and the Train-PC is the way I import the model which I believe may be causing this (possibly it's not recognised). I posted previously about this error here.



Since the Train-PC is not my own, I cannot change the version of the packages. So I am looking for a solution which does not involve downgrading versions, as the issue with importing wasn't solved through that also.



Home-PC (Mac):



tensorflow==1.11.0
keras 2.2.4


Train-PC (Ubuntu):



tensorflow-gpu==1.10.1
keras 2.1.2


Code of CNN:



class ResNetCNN:

def __init__(self):
self.graph = tf.Graph()
self.sess = tf.Session(graph=self.graph)

with self.sess.graph.as_default():
# Load pre-trained model from file
self.CNN_ResNet_Pascal = models.load_model(CNN_MODEL_DIR)
# self.CNN_ResNet_Pascal = tf.keras.models.load_model(CNN_MODEL_DIR)

self.extract_feature_vector = K.function([self.CNN_ResNet_Pascal.layers[0].input],
[self.CNN_ResNet_Pascal.layers[-4].output])

def feed_forward(self, img):
"""Extract the feature vector of the passed image using the pre-trained CNN."""

# Resize observable region into input volume
X_img = np.array(img, dtype=np.float32).reshape(-1, IMG_SIZE, IMG_SIZE, 3)

# Normalise feature data
X_img_norm = X_img / 255.0

# Extract feature vector from the pre-trained CNN (1, 4096)
feature_vector = self.extract_feature_vector([X_img_norm])[0]

# Reshape tensor to (4096, )
feature_vector = np.array(feature_vector).reshape(4096, )

# Confirm that the correct output layer was used
assert feature_vector.shape == (4096, ), "Incorrect CNN output layer: shape = {}".format(feature_vector.shape)

return feature_vector


Error:



Traceback (most recent call last):
File "keras_pn.py", line 856, in <module>
s, a, r, d_r, n = rollout(epsilon, RENDER, PolicyNetwork, ResNetCNN)
File "keras_pn.py", line 682, in rollout
feature_vector = ResNetCNN.feed_forward(observable_region)
File "keras_pn.py", line 87, in feed_forward
feature_vector = self.extract_feature_vector([X_img_norm])[0]
File "/home/name/anaconda3/lib/python3.6/site-packages/keras/backend/tensorflow_backend.py", line 2357, in __call__
**self.session_kwargs)
File "/home/name/anaconda3/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 877, in run
run_metadata_ptr)
File "/home/name/anaconda3/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1025, in _run
raise RuntimeError('The Session graph is empty. Add operations to the '
RuntimeError: The Session graph is empty. Add operations to the graph before calling run().


Edit:



def __init__(self):
self.graph = tf.Graph()

with self.graph.as_default():
# Load pre-trained model from file
self.CNN_ResNet_Pascal = models.load_model(CNN_MODEL_DIR)
# self.CNN_ResNet_Pascal = tf.keras.models.load_model(CNN_MODEL_DIR)

self.extract_feature_vector = K.function([self.CNN_ResNet_Pascal.layers[0].input],
[self.CNN_ResNet_Pascal.layers[-4].output])

self.sess = tf.Session(graph=self.graph)









share|improve this question

























  • You need to build the graph before starting the session.

    – Dinari
    Nov 25 '18 at 7:12











  • @OrDinari I built the graph prior to starting the session yet I still get the error. I have edited the init function and edited the post showing it.

    – Joshua
    Nov 25 '18 at 7:25


















0















I am trying to use a Policy Network and CNN within the same Python file. I am only training the PN and using the CNN as a feed-forward feature extractor. I am getting an issue where the Train-PC isn't "building" the imported Keras graph into the session, and thus when I try to run a feed-forward function on the CNN (feature_vector = self.extract_feature_vector([X_img_norm])[0]), I get the error posted below.



The only difference between the files on the Home-PC I am developing on and the Train-PC is the way I import the model which I believe may be causing this (possibly it's not recognised). I posted previously about this error here.



Since the Train-PC is not my own, I cannot change the version of the packages. So I am looking for a solution which does not involve downgrading versions, as the issue with importing wasn't solved through that also.



Home-PC (Mac):



tensorflow==1.11.0
keras 2.2.4


Train-PC (Ubuntu):



tensorflow-gpu==1.10.1
keras 2.1.2


Code of CNN:



class ResNetCNN:

def __init__(self):
self.graph = tf.Graph()
self.sess = tf.Session(graph=self.graph)

with self.sess.graph.as_default():
# Load pre-trained model from file
self.CNN_ResNet_Pascal = models.load_model(CNN_MODEL_DIR)
# self.CNN_ResNet_Pascal = tf.keras.models.load_model(CNN_MODEL_DIR)

self.extract_feature_vector = K.function([self.CNN_ResNet_Pascal.layers[0].input],
[self.CNN_ResNet_Pascal.layers[-4].output])

def feed_forward(self, img):
"""Extract the feature vector of the passed image using the pre-trained CNN."""

# Resize observable region into input volume
X_img = np.array(img, dtype=np.float32).reshape(-1, IMG_SIZE, IMG_SIZE, 3)

# Normalise feature data
X_img_norm = X_img / 255.0

# Extract feature vector from the pre-trained CNN (1, 4096)
feature_vector = self.extract_feature_vector([X_img_norm])[0]

# Reshape tensor to (4096, )
feature_vector = np.array(feature_vector).reshape(4096, )

# Confirm that the correct output layer was used
assert feature_vector.shape == (4096, ), "Incorrect CNN output layer: shape = {}".format(feature_vector.shape)

return feature_vector


Error:



Traceback (most recent call last):
File "keras_pn.py", line 856, in <module>
s, a, r, d_r, n = rollout(epsilon, RENDER, PolicyNetwork, ResNetCNN)
File "keras_pn.py", line 682, in rollout
feature_vector = ResNetCNN.feed_forward(observable_region)
File "keras_pn.py", line 87, in feed_forward
feature_vector = self.extract_feature_vector([X_img_norm])[0]
File "/home/name/anaconda3/lib/python3.6/site-packages/keras/backend/tensorflow_backend.py", line 2357, in __call__
**self.session_kwargs)
File "/home/name/anaconda3/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 877, in run
run_metadata_ptr)
File "/home/name/anaconda3/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1025, in _run
raise RuntimeError('The Session graph is empty. Add operations to the '
RuntimeError: The Session graph is empty. Add operations to the graph before calling run().


Edit:



def __init__(self):
self.graph = tf.Graph()

with self.graph.as_default():
# Load pre-trained model from file
self.CNN_ResNet_Pascal = models.load_model(CNN_MODEL_DIR)
# self.CNN_ResNet_Pascal = tf.keras.models.load_model(CNN_MODEL_DIR)

self.extract_feature_vector = K.function([self.CNN_ResNet_Pascal.layers[0].input],
[self.CNN_ResNet_Pascal.layers[-4].output])

self.sess = tf.Session(graph=self.graph)









share|improve this question

























  • You need to build the graph before starting the session.

    – Dinari
    Nov 25 '18 at 7:12











  • @OrDinari I built the graph prior to starting the session yet I still get the error. I have edited the init function and edited the post showing it.

    – Joshua
    Nov 25 '18 at 7:25














0












0








0








I am trying to use a Policy Network and CNN within the same Python file. I am only training the PN and using the CNN as a feed-forward feature extractor. I am getting an issue where the Train-PC isn't "building" the imported Keras graph into the session, and thus when I try to run a feed-forward function on the CNN (feature_vector = self.extract_feature_vector([X_img_norm])[0]), I get the error posted below.



The only difference between the files on the Home-PC I am developing on and the Train-PC is the way I import the model which I believe may be causing this (possibly it's not recognised). I posted previously about this error here.



Since the Train-PC is not my own, I cannot change the version of the packages. So I am looking for a solution which does not involve downgrading versions, as the issue with importing wasn't solved through that also.



Home-PC (Mac):



tensorflow==1.11.0
keras 2.2.4


Train-PC (Ubuntu):



tensorflow-gpu==1.10.1
keras 2.1.2


Code of CNN:



class ResNetCNN:

def __init__(self):
self.graph = tf.Graph()
self.sess = tf.Session(graph=self.graph)

with self.sess.graph.as_default():
# Load pre-trained model from file
self.CNN_ResNet_Pascal = models.load_model(CNN_MODEL_DIR)
# self.CNN_ResNet_Pascal = tf.keras.models.load_model(CNN_MODEL_DIR)

self.extract_feature_vector = K.function([self.CNN_ResNet_Pascal.layers[0].input],
[self.CNN_ResNet_Pascal.layers[-4].output])

def feed_forward(self, img):
"""Extract the feature vector of the passed image using the pre-trained CNN."""

# Resize observable region into input volume
X_img = np.array(img, dtype=np.float32).reshape(-1, IMG_SIZE, IMG_SIZE, 3)

# Normalise feature data
X_img_norm = X_img / 255.0

# Extract feature vector from the pre-trained CNN (1, 4096)
feature_vector = self.extract_feature_vector([X_img_norm])[0]

# Reshape tensor to (4096, )
feature_vector = np.array(feature_vector).reshape(4096, )

# Confirm that the correct output layer was used
assert feature_vector.shape == (4096, ), "Incorrect CNN output layer: shape = {}".format(feature_vector.shape)

return feature_vector


Error:



Traceback (most recent call last):
File "keras_pn.py", line 856, in <module>
s, a, r, d_r, n = rollout(epsilon, RENDER, PolicyNetwork, ResNetCNN)
File "keras_pn.py", line 682, in rollout
feature_vector = ResNetCNN.feed_forward(observable_region)
File "keras_pn.py", line 87, in feed_forward
feature_vector = self.extract_feature_vector([X_img_norm])[0]
File "/home/name/anaconda3/lib/python3.6/site-packages/keras/backend/tensorflow_backend.py", line 2357, in __call__
**self.session_kwargs)
File "/home/name/anaconda3/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 877, in run
run_metadata_ptr)
File "/home/name/anaconda3/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1025, in _run
raise RuntimeError('The Session graph is empty. Add operations to the '
RuntimeError: The Session graph is empty. Add operations to the graph before calling run().


Edit:



def __init__(self):
self.graph = tf.Graph()

with self.graph.as_default():
# Load pre-trained model from file
self.CNN_ResNet_Pascal = models.load_model(CNN_MODEL_DIR)
# self.CNN_ResNet_Pascal = tf.keras.models.load_model(CNN_MODEL_DIR)

self.extract_feature_vector = K.function([self.CNN_ResNet_Pascal.layers[0].input],
[self.CNN_ResNet_Pascal.layers[-4].output])

self.sess = tf.Session(graph=self.graph)









share|improve this question
















I am trying to use a Policy Network and CNN within the same Python file. I am only training the PN and using the CNN as a feed-forward feature extractor. I am getting an issue where the Train-PC isn't "building" the imported Keras graph into the session, and thus when I try to run a feed-forward function on the CNN (feature_vector = self.extract_feature_vector([X_img_norm])[0]), I get the error posted below.



The only difference between the files on the Home-PC I am developing on and the Train-PC is the way I import the model which I believe may be causing this (possibly it's not recognised). I posted previously about this error here.



Since the Train-PC is not my own, I cannot change the version of the packages. So I am looking for a solution which does not involve downgrading versions, as the issue with importing wasn't solved through that also.



Home-PC (Mac):



tensorflow==1.11.0
keras 2.2.4


Train-PC (Ubuntu):



tensorflow-gpu==1.10.1
keras 2.1.2


Code of CNN:



class ResNetCNN:

def __init__(self):
self.graph = tf.Graph()
self.sess = tf.Session(graph=self.graph)

with self.sess.graph.as_default():
# Load pre-trained model from file
self.CNN_ResNet_Pascal = models.load_model(CNN_MODEL_DIR)
# self.CNN_ResNet_Pascal = tf.keras.models.load_model(CNN_MODEL_DIR)

self.extract_feature_vector = K.function([self.CNN_ResNet_Pascal.layers[0].input],
[self.CNN_ResNet_Pascal.layers[-4].output])

def feed_forward(self, img):
"""Extract the feature vector of the passed image using the pre-trained CNN."""

# Resize observable region into input volume
X_img = np.array(img, dtype=np.float32).reshape(-1, IMG_SIZE, IMG_SIZE, 3)

# Normalise feature data
X_img_norm = X_img / 255.0

# Extract feature vector from the pre-trained CNN (1, 4096)
feature_vector = self.extract_feature_vector([X_img_norm])[0]

# Reshape tensor to (4096, )
feature_vector = np.array(feature_vector).reshape(4096, )

# Confirm that the correct output layer was used
assert feature_vector.shape == (4096, ), "Incorrect CNN output layer: shape = {}".format(feature_vector.shape)

return feature_vector


Error:



Traceback (most recent call last):
File "keras_pn.py", line 856, in <module>
s, a, r, d_r, n = rollout(epsilon, RENDER, PolicyNetwork, ResNetCNN)
File "keras_pn.py", line 682, in rollout
feature_vector = ResNetCNN.feed_forward(observable_region)
File "keras_pn.py", line 87, in feed_forward
feature_vector = self.extract_feature_vector([X_img_norm])[0]
File "/home/name/anaconda3/lib/python3.6/site-packages/keras/backend/tensorflow_backend.py", line 2357, in __call__
**self.session_kwargs)
File "/home/name/anaconda3/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 877, in run
run_metadata_ptr)
File "/home/name/anaconda3/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1025, in _run
raise RuntimeError('The Session graph is empty. Add operations to the '
RuntimeError: The Session graph is empty. Add operations to the graph before calling run().


Edit:



def __init__(self):
self.graph = tf.Graph()

with self.graph.as_default():
# Load pre-trained model from file
self.CNN_ResNet_Pascal = models.load_model(CNN_MODEL_DIR)
# self.CNN_ResNet_Pascal = tf.keras.models.load_model(CNN_MODEL_DIR)

self.extract_feature_vector = K.function([self.CNN_ResNet_Pascal.layers[0].input],
[self.CNN_ResNet_Pascal.layers[-4].output])

self.sess = tf.Session(graph=self.graph)






python tensorflow keras






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share|improve this question




share|improve this question








edited Nov 25 '18 at 7:25







Joshua

















asked Nov 25 '18 at 7:02









JoshuaJoshua

296




296













  • You need to build the graph before starting the session.

    – Dinari
    Nov 25 '18 at 7:12











  • @OrDinari I built the graph prior to starting the session yet I still get the error. I have edited the init function and edited the post showing it.

    – Joshua
    Nov 25 '18 at 7:25



















  • You need to build the graph before starting the session.

    – Dinari
    Nov 25 '18 at 7:12











  • @OrDinari I built the graph prior to starting the session yet I still get the error. I have edited the init function and edited the post showing it.

    – Joshua
    Nov 25 '18 at 7:25

















You need to build the graph before starting the session.

– Dinari
Nov 25 '18 at 7:12





You need to build the graph before starting the session.

– Dinari
Nov 25 '18 at 7:12













@OrDinari I built the graph prior to starting the session yet I still get the error. I have edited the init function and edited the post showing it.

– Joshua
Nov 25 '18 at 7:25





@OrDinari I built the graph prior to starting the session yet I still get the error. I have edited the init function and edited the post showing it.

– Joshua
Nov 25 '18 at 7:25












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