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I know this question has been marked as answered but I wanted to mention two libraries that enable us to write micro benchmarks

Caliper from Google

Getting started tutorials

1. http://codingjunkie.net/micro-benchmarking-with-caliper/


2. http://vertexlabs.co.uk/blog/caliper

JMH from OpenJDK

Getting started tutorials

1. Avoiding Benchmarking Pitfalls on the JVM


2. http://nitschinger.at/Using-JMH-for-Java-Microbenchmarking


3. http://java-performance.info/jmh/

Important things for Java benchmarks are:

• Warm up the JIT first by running the code several times before timing it


• Make sure you run it for long enough to be able to measure the results in seconds or (better) tens of seconds


• While you can't call System.gc() between iterations, it's a good idea to run it between tests, so that each test will hopefully get a "clean" memory space to work with. (Yes, gc() is more of a hint than a guarantee, but it's very likely that it really will garbage collect in my experience.)


• I like to display iterations and time, and a score of time/iteration which can be scaled such that the "best" algorithm gets a score of 1.0 and others are scored in a relative fashion. This means you can run all algorithms for a longish time, varying both number of iterations and time, but still getting comparable results.

I'm just in the process of blogging about the design of a benchmarking framework in .NET. I've got a couple of earlier posts which may be able to give you some ideas - not everything will be appropriate, of course, but some of it may be.

jmh is a recent addition to OpenJDK and has been written by some performance engineers from Oracle. Certainly worth having a look.

The jmh is a Java harness for building, running, and analysing nano/micro/macro benchmarks written in Java and other languages targetting the JVM.

Very interesting pieces of information buried in the sample tests comments.

See also:

• Avoiding Benchmarking Pitfalls on the JVM


• 
  Discussion on the main strengths of jmh.

Should the benchmark measure time/iteration or iterations/time, and why?

It depends on what you are trying to test. If you are interested in latency, use time/iteration and if you are interested in throughput use iterations/time.

Make sure you somehow use results which are computed in benchmarked code. Otherwise your code can be optimized away.

If you are trying to compare two algorithms, do at least two benchmarks on each, alternating the order. i.e.:

for(i=1..n)

  alg1();

for(i=1..n)

  alg2();

for(i=1..n)

  alg2();

for(i=1..n)

  alg1();

I have found some noticeable differences (5-10% sometimes) in the runtime of the same algorithm in different passes..

Also, make sure that n is very large, so that the runtime of each loop is at the very least 10 seconds or so. The more iterations, the more significant figures in your benchmark time and the more reliable that data is.

There are many possible pitfalls for writing micro-benchmarks in Java.

First: You have to calculate with all sorts of events that take time more or less random: Garbage collection, caching effects (of OS for files and of CPU for memory), IO etc.

Second: You cannot trust the accuracy of the measured times for very short intervals.

Third: The JVM optimizes your code while executing. So different runs in the same JVM-instance will become faster and faster.

My recommendations: Make your benchmark run some seconds, that is more reliable than a runtime over milliseconds. Warm up the JVM (means running the benchmark at least once without measuring, that the JVM can run optimizations). And run your benchmark multiple times (maybe 5 times) and take the median-value. Run every micro-benchmark in a new JVM-instance (call for every benchmark new Java) otherwise optimization effects of the JVM can influence later running tests. Don't execute things, that aren't executed in the warmup-phase (as this could trigger class-load and recompilation).

It should also be noted that it might also be important to analyze the results of the micro benchmark when comparing different implementations. Therefore a significance test should be made.

This is because implementation A might be faster during most of the runs of the benchmark than implementation B. But A might also have a higher spread, so the measured performance benefit of A won't be of any significance when compared with B.

So it is also important to write and run a micro benchmark correctly, but also to analyze it correctly.

http://opt.sourceforge.net/ Java Micro Benchmark - control tasks required to determine the comparative performance characteristics of the computer system on different platforms. Can be used to guide optimization decisions and to compare different Java implementations.

To add to the other excellent advice, I'd also be mindful of the following:

For some CPUs (e.g. Intel Core i5 range with TurboBoost), the temperature (and number of cores currently being used, as well as thier utilisation percent) affects the clock speed. Since CPUs are dynamically clocked, this can affect your results. For example, if you have a single-threaded application, the maximum clock speed (with TurboBoost) is higher than for an application using all cores. This can therefore interfere with comparisons of single and multi-threaded performance on some systems. Bear in mind that the temperature and volatages also affect how long Turbo frequency is maintained.

Perhaps a more fundamentally important aspect that you have direct control over: make sure you're measuring the right thing! For example, if you're using System.nanoTime() to benchmark a particular bit of code, put the calls to the assignment in places that make sense to avoid measuring things which you aren't interested in. For example, don't do:

long startTime = System.nanoTime();

//code here...

System.out.println("Code took "+(System.nanoTime()-startTime)+"nano seconds");

Problem is you're not immediately getting the end time when the code has finished. Instead, try the following:

final long endTime, startTime = System.nanoTime();

//code here...

endTime = System.nanoTime();

System.out.println("Code took "+(endTime-startTime)+"nano seconds");